Showing : convert • reset
0
votes
2
replies
335
views
NCBI protein conversion to CDNA and NCBI gene (in R)
convert
updated 4 months ago by 65k • written 4 months ago by • 0
1
vote
3
replies
447
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 5 months ago by 65k • written 5 months ago by • 0
2
votes
5
replies
755
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
5 months ago j_denton • 0
2
votes
1
reply
663
views
Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
oligoData DataImport oligo RNASeqData convert
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
2
replies
1.2k
views
suggestions/comments on DESeq transcript wise analysis
convert DESeq convert DESeq
written 12.2 years ago by ▴ 190
1
vote
2
replies
6.2k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 16 months ago by ▴ 20 • written 6.4 years ago by • 0
0
votes
0
replies
622
views
TFutils database
TFutils mouse gene convert
2.9 years ago nicocillari • 0
2
votes
6
replies
1.6k
views
getLDS error in scan
biomaRt getLDS convert gene symbols
updated 3.5 years ago by ★ 6.5k • written 3.5 years ago by • 0
1
vote
4
replies
1.4k
views
RNA-seq analysis using R
limma rnaseq convert R
updated 12 months ago by 50k • written 5.4 years ago by • 0
0
votes
3
replies
3.5k
views
convert affy CEL files to data.frame??
convert convert
updated 5.6 years ago by • 0 • written 13.2 years ago by ▴ 40
1
vote
7
replies
2.2k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
1
vote
3
replies
1.4k
views
To convert MAList to ExpressionSet using R package 'convert'
convert
updated 7.5 years ago by 50k • written 7.5 years ago by • 0
0
votes
5
replies
6.0k
views
How to reverse translate amino acid sequence into mammalian codon optimised cDNA
convert translation
written 9.4 years ago by ▴ 20
1
vote
1
reply
1.4k
views
converting amino-acid one letter code into cDNA sequene
convert aminoacid-onlettercode cDNA
7.9 years ago arvind90.psc • 0
1
vote
2
replies
2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.1 years ago by • 0
1
vote
2
replies
3.3k
views
minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 8.3 years ago by ▴ 30 • written 9.9 years ago by ★ 3.9k
1
vote
1
reply
1.6k
views
Error of GDS2eSet() function
convert geoquery error GDS2eSet
updated 8.3 years ago by 65k • written 8.3 years ago by • 0
0
votes
3
replies
1.9k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Cancer convert minfi Cancer convert minfi
updated 8.5 years ago by • 0 • written 10.2 years ago by ★ 6.5k
0
votes
0
replies
1.1k
views
How to convert codominant Microsatellite two column data into illumina AB format?
Microsatellite Convert recode
8.5 years ago parka • 0
0
votes
3
replies
11k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
6
votes
1
reply
3.0k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.3 years ago by ▴ 370 • written 10.4 years ago by ▴ 160
5
votes
5
replies
2.0k
views
Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics chipseq biomart shortread convert biomaRt
9.6 years ago patrick.schordert ▴ 30
0
votes
1
reply
2.0k
views
Converting .gpr files to .csv files
Microarray GO convert
updated 9.6 years ago by 65k • written 9.6 years ago by ★ 13k
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome convert BSgenome PWMEnrich MotifDb
updated 9.6 years ago by ▴ 80 • written 9.6 years ago by ▴ 50
0
votes
0
replies
1.4k
views
ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
9.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.0k
views
narrow and xstringset
convert convert
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 680
0
votes
2
replies
2.9k
views
Biomart annotation
annotate convert annotate convert
updated 9.8 years ago by ▴ 190 • written 9.8 years ago by ▴ 40
0
votes
2
replies
1.8k
views
ShortReadQ and conversion of quality scores to characters
convert convert
updated 9.8 years ago by 25k • written 9.8 years ago by ▴ 310
0
votes
1
reply
1.7k
views
SomaticSignatures
Annotation Cancer convert Annotation Cancer convert
updated 9.8 years ago by ★ 1.3k • written 9.8 years ago by ▴ 90
0
votes
6
replies
3.2k
views
converting probeset id to gene id's : fRMA
probe affy convert frma probe affy convert frma
updated 9.8 years ago by ★ 3.0k • written 9.9 years ago by ▴ 190
0
votes
7
replies
1.7k
views
Approaches to building Rle sequences from ranges
GO convert GO convert
updated 9.9 years ago by ▴ 90 • written 9.9 years ago by ▴ 40
0
votes
2
replies
2.2k
views
GRanges - coercion from dataframe
convert convert
updated 9.9 years ago by ★ 11k • written 9.9 years ago by ▴ 10
0
votes
4
replies
1.5k
views
GenomicAlignments and QNAME collision
RNASeq Cancer convert Rsamtools GenomicAlignments RNASeq Cancer convert Rsamtools
updated 9.9 years ago by ▴ 90 • written 9.9 years ago by ★ 6.8k
0
votes
4
replies
1.5k
views
error on loading ratioConvert() in minfi
convert minfi convert minfi
updated 9.9 years ago by ★ 6.5k • written 9.9 years ago by ★ 13k
1
vote
2
replies
12k
views
Mapping gene symbols to gene names (org.Hs.eg.db?)
convert convert
updated 10.0 years ago by 65k • written 10.0 years ago by ★ 1.1k
0
votes
0
replies
1.2k
views
viewApply drops feature names; transfer names between lists
Coverage convert Coverage convert
10.0 years ago Chris Seidel ▴ 80
0
votes
0
replies
2.1k
views
Pathview question
Network convert pathview Network convert pathview
10.0 years ago Luo Weijun ★ 1.6k
0
votes
9
replies
2.6k
views
ReportingTools gene IDs
convert convert
updated 10.0 years ago by 65k • written 10.0 years ago by ★ 1.5k
0
votes
5
replies
2.6k
views
summarizeOverlaps using GRanges or bed file as reads?
convert convert
updated 10.0 years ago by 25k • written 10.0 years ago by ★ 7.9k
0
votes
0
replies
945
views
BiomaRt getBM error: Unknown column
convert biomaRt convert biomaRt
10.1 years ago Guest User ★ 13k
0
votes
5
replies
1.7k
views
A question about the function readGAlignmentPairs in GenomicRnages package
Alignment Cancer convert GenomicAlignments Alignment Cancer convert GenomicAlignments
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 50
0
votes
0
replies
1.4k
views
CellMix package use with own data matrix
convert convert
10.1 years ago Riba Michela ▴ 90
0
votes
0
replies
1.3k
views
crlmm problem
SNP convert beadarray crlmm SNP convert beadarray crlmm
10.1 years ago Matthias Arnold ▴ 10
0
votes
0
replies
1.7k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.2 years ago Allegra Petti ▴ 120
0
votes
8
replies
2.2k
views
methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
0
votes
6
replies
3.0k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.2 years ago by 65k • written 10.2 years ago by ★ 13k
0
votes
2
replies
1.3k
views
Tigre Package question 3
Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess
updated 10.2 years ago by ▴ 60 • written 10.2 years ago by ▴ 50
0
votes
2
replies
1.7k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
convert minfi convert minfi
updated 10.2 years ago by ★ 6.5k • written 10.2 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Using GOstats with ScanArray Express Data
Organism probe convert GOstats Organism probe convert GOstats
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ★ 13k
0
votes
3
replies
2.1k
views
ChIPpeakAnno: TSS at - strand
Annotation convert ChIPpeakAnno Annotation convert ChIPpeakAnno
10.3 years ago Julie Zhu ★ 4.3k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Awards • All
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Popular Question to Bine ▴ 40
Locations • All
Portugal, 1 minute ago
France, 4 minutes ago
WEHI, Melbourne, Australia, 7 minutes ago
India, 10 minutes ago
Iran, 12 minutes ago
Traffic: 950 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6