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Showing :
crisprseek
•
reset
0
votes
38
replies
3.5k
views
running off target analaysis
crisprseek
7.2 years ago
Yap-JM
• 0
2
votes
27
replies
4.0k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.6 years ago • updated 8.5 years ago
alexgraehl
▴ 20
5
votes
24
replies
3.4k
views
CRISPRseek scoring clarification
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
elspeth.ransom
• 0
6
votes
14
replies
2.0k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.7 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
Dawid G. Nowak
▴ 40
6
votes
12
replies
1.8k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek
software error
4.5 years ago
nils.hassel
• 0
4
votes
12
replies
1.7k
views
CFDscore calculations used in CRISPRseek
crisprseek
CFDscore
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
Dawid G. Nowak
▴ 40
5
votes
11
replies
1.4k
views
CRISPRseek Unusual Error
crisprseek
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Dawid G. Nowak
▴ 40
3
votes
10
replies
1.4k
views
CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coercion
CRISPRseek
Error in hash
NAs introduced by coercion
updated 3.9 years ago by
Julie Zhu
★ 4.3k • written 3.9 years ago by
nils.hassel
• 0
1
vote
9
replies
2.3k
views
CRISPRseek for Arabidopsis
crisprseek
arabidopsis thaliana
updated 9.4 years ago by
Julie Zhu
★ 4.3k • written 9.5 years ago by
jeremyatwsu
• 0
0
votes
8
replies
2.0k
views
CRISPRseek: annotate gene
CRISPRseek
9.5 years ago • updated 8.9 years ago
Julie Zhu
★ 4.3k
1
vote
8
replies
1.7k
views
CRISPRseek with genome not available in BSgenome
bsgenome
crisprseek
updated 6.8 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
millepattes.intersites
• 0
2
votes
7
replies
2.7k
views
CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") interpretation
CRISPRseek
3.4 years ago • updated 3.3 years ago
xenon
▴ 40
0
votes
6
replies
1.7k
views
CRISPRseek CFD score
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
6
replies
1.5k
views
CRISPRseed gRNA.pattern is not producing expected result
crisprseek
updated 7.1 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
prp291
• 0
0
votes
5
replies
3.0k
views
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows
CRISPRseek
2.4 years ago • updated 2.3 years ago
Miguel
• 0
0
votes
5
replies
1.1k
views
CRISPRseek help to generate gRNAs for CRISPRi library
CRISPRseek
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
Lucka387
• 0
0
votes
5
replies
1.4k
views
CRISPRseek prediction of truncated Nme sgRNA and getting error message
crisprseek
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
Daniel
• 0
0
votes
5
replies
1.4k
views
CRISPRseek offTargetAnalysis errors
CRISPRseek
6.3 years ago
joyce
• 0
0
votes
4
replies
1.0k
views
CRISPRseek:::findgRNAs paired gRNAs with PAM inward orientation
CRISPRseek
paired gRNA
updated 4.9 years ago by
Julie Zhu
★ 4.3k • written 4.9 years ago by
saba.parvez
• 0
2
votes
3
replies
1.7k
views
offTargetAnalysis() Error in weights %*% mismatch.pos : non-conformable arguments (CRISPRSeek)
CRISPRseek
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
robert_w_link
• 0
0
votes
3
replies
1.2k
views
CRISPRseek Ouput File Name
CRISPRseek
OutputFileName
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
bhanson1806
• 0
4
votes
3
replies
865
views
Improving the run-time of offTargetAnalysis()
CRISPRseek
updated 3.0 years ago by
Daniel
• 0 • written 3.5 years ago by
xenon
▴ 40
0
votes
3
replies
1.2k
views
CRISPRseek with Doench 2016 scores
crisprseek
updated 6.8 years ago by
Julie Zhu
★ 4.3k • written 6.8 years ago by
pavitrarc
▴ 20
2
votes
3
replies
1.1k
views
offTargetAnalysis takes super long
CRISPRseek
updated 8.6 years ago by
Julie Zhu
★ 4.3k • written 8.6 years ago by
Dawid G. Nowak
▴ 40
0
votes
2
replies
953
views
Does CRISPRSEEK work on previously unknown genomes?
crisprseek
unknown genome
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
yhuang2
• 0
0
votes
2
replies
744
views
gRNA design for prime editing using CRISPRseek
CRISPRseek
pegRNA
prime editing gRNA
updated 4.0 years ago by
Julie Zhu
★ 4.3k • written 4.0 years ago by
giti_gazisoltani
• 0
0
votes
2
replies
1.8k
views
CRISPRseek: alternative PAM sequence from NmCas9
CRISPRseek
gRNA searching
offtarget analysis
NmCas9
8.9 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.2k
views
"NNG[A|G][A|G]N$" in CRISPRseek code
crisprseek
SaCas9
PAM
6.8 years ago • updated 6.7 years ago
bhanson1806
• 0
0
votes
2
replies
779
views
CRISPRseek package: findgRNAs error
CRISPRseek
2.5 years ago
nderian
▴ 10
1
vote
2
replies
1.1k
views
CRISPRseek searching requirement
CRISPRSEEK
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
Daniel
• 0
0
votes
2
replies
759
views
CRISPRseek package: 5’ PAM?
CRISPRseek
3.1 years ago
nderian
▴ 10
1
vote
2
replies
895
views
CRISPRseek package: offTargetAnalysis() error with mouse genome
CRISPRseek
2.4 years ago
nderian
▴ 10
0
votes
2
replies
1.8k
views
TxDb file for Drerio (ie zebrafish)
Organism
zebrafish
CRISPRseek
Organism
zebrafish
CRISPRseek
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Brodsky, Michael
▴ 10
0
votes
2
replies
1.3k
views
Problem installing CRISPRseek
crisprseek
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
ldumas9
• 0
3
votes
2
replies
1.2k
views
CRISPRseek with (rough) Draft Genome
crisprseek
grna searching
bsgenome forge
offtarget analysis
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
rajewski23
• 0
0
votes
2
replies
2.3k
views
CRISPRseek question on scoring
CRISPRseek
9.7 years ago • updated 5.2 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
995
views
CRISPRseek offTargetAnalysis score
bioconductor
crisprseek
offtarget analysis
7.5 years ago
Marie
• 0
1
vote
2
replies
900
views
A unexpected error occurred when using CRISPRseek package
crisprseek
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
prokaryote23
• 0
1
vote
2
replies
963
views
How to understand Summary.xls in output of CRISPRseek
crisprseek
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
Ou, Jianhong
★ 1.3k
4
votes
1
reply
771
views
CRISPRSeek Results files column interpretation
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
xenon
▴ 40
1
vote
1
reply
1.4k
views
News:
CRISPRseek: generate gRNAs in bed format, useScore argument
CRISPRseek
News
updated 9.5 years ago by
orkanilbay
• 0 • written 9.5 years ago by
Julie Zhu
★ 4.3k
1
vote
1
reply
1.4k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.3 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
alexgraehl
▴ 20
0
votes
1
reply
952
views
ERROR generated by CRISPRseek
crisprseek
8.1 years ago
Daniel
• 0
0
votes
1
reply
827
views
Error Searching for gRNAs ...
crisprseek
updated 8.0 years ago by
Julie Zhu
★ 4.3k • written 8.0 years ago by
krababah
• 0
0
votes
1
reply
924
views
offTargetAnalysis result interpretation
crisprseek
updated 8.0 years ago by
Julie Zhu
★ 4.3k • written 8.0 years ago by
krababah
• 0
0
votes
1
reply
1.1k
views
Help with CRISPRseek inputFilePath
CRISPRseek
input files
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
bhanson1806
• 0
0
votes
1
reply
935
views
tilling sgRNA library design
bioconductor
crisprseek
updated 7.1 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
renxj2008
• 0
0
votes
1
reply
1.1k
views
CRISPRseek How to get a correct result of searchHits2 ?
crisprseek
graph
updated 6.8 years ago by
Julie Zhu
★ 4.3k • written 6.8 years ago by
liuyue235
• 0
0
votes
1
reply
1.4k
views
Compareequence function is not running
software error
compilation error
CRISPRseek
updated 6.7 years ago by
daniel.vantwisk
▴ 50 • written 6.7 years ago by
susobhanbaidya
• 0
0
votes
1
reply
947
views
CFD scores for searchHits?
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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