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961

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HELP Data

updated 3.0 years ago by Guido Hooiveld ★ 4.1k • written 3.0 years ago by mcclurejenniferc • 0

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803

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BAM Segmentation CINdex VCF Data

3.0 years ago raven1306 • 0

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3.2k

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ExpressionSet Assay NanoString Error Data

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by junli1988 • 0

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837

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Cytometry R Data

3.2 years ago hamiltond ▴ 10

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1.3k

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data immunology software vaccinology

4.0 years ago Daniel • 0

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1.6k

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TCGAbiolinks data normalize l

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by DANIELA • 0

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2.5k

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data package submission BiocCheck

6.1 years ago j.flesch ▴ 10

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1.2k

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package data

7.0 years ago divyswar01 • 0

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904

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cellGrowth data

7.4 years ago muitalegal888 • 0

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1.6k

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omiccircos bug hg19 hg18 data

8.3 years ago matthew.bashton • 0

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1.5k

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transform flow cytometry data

updated 8.6 years ago by SamGG ▴ 360 • written 8.6 years ago by cr • 0

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1.6k

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rna-seq data

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by bioinformatics ▴ 20

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1.9k

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edger data analysis

10.2 years ago Pau Marc Muñoz Torres ▴ 20

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1.5k

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data

10.3 years ago Bogdan ▴ 670

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4.1k

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biseq fdr data results

10.4 years ago • updated 10.3 years ago mnaymik ▴ 10

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2.5k

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flowCore flowjo data

updated 10.8 years ago by Greg Finak ▴ 150 • written 10.8 years ago by AJC ▴ 10

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3.5k

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limma export log2 data agilent

updated 10.9 years ago by James W. MacDonald 68k • written 10.9 years ago by Jahn Davik ▴ 110

17 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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Popular Question to Robert Castelo ★ 3.4k