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2
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15
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3.0k
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BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.1 years ago • updated 9.0 years ago
mnaymik
▴ 10
2
votes
4
replies
1.4k
views
edgeR, data processing with some missed values
edger
data
analysis
8.8 years ago
Pau Marc Muñoz Torres
▴ 20
1
vote
2
replies
1.2k
views
about transforming a data.frame
data
8.9 years ago
Bogdan
▴ 670
0
votes
1
reply
1.1k
views
Transform data from MoFlo Astrios
transform
flow cytometry
data
updated 7.3 years ago by
SamGG
▴ 350 • written 7.3 years ago by
cr
• 0
2
votes
4
replies
3.0k
views
exporting limma log2 data
limma
export
log2
data
agilent
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
Jahn Davik
▴ 110
1
vote
2
replies
2.0k
views
data() doesn't work for fcs files?
flowCore
flowjo
data
updated 9.4 years ago by
Greg Finak
▴ 150 • written 9.5 years ago by
AJC
▴ 10
0
votes
1
reply
1.2k
views
Drug datasets for RNA-seq
rna-seq
data
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
bioinformatics
▴ 10
2
votes
1
reply
941
views
Curated Data Package in Bioconductor
package
data
5.7 years ago
divyswar01
• 0
0
votes
3
replies
2.1k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet
Assay
NanoString
Error
Data
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
junli1988
• 0
0
votes
1
reply
1.1k
views
Help With TCGAbiolinks package
TCGAbiolinks
data
normalize
l
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
DANIELA
• 0
0
votes
1
reply
571
views
Data visualization
HELP
Data
updated 20 months ago by
Guido Hooiveld
★ 3.9k • written 20 months ago by
mcclurejenniferc
• 0
0
votes
0
replies
503
views
Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
20 months ago
raven1306
• 0
1
vote
0
replies
550
views
Mapping patient dataset onto control dataset
Cytometry
R
Data
22 months ago
hamiltond
▴ 10
0
votes
0
replies
1.3k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.0 years ago
matthew.bashton
• 0
0
votes
0
replies
710
views
Data for cellGrowth package
cellGrowth
data
6.0 years ago
muitalegal888
• 0
0
votes
0
replies
854
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
2.6 years ago
Daniel
• 0
1
vote
2
replies
1.9k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.8 years ago
j.flesch
▴ 10
17 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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