Bioconductor Data

Showing : data • reset

votes

replies

3.5k

views

biseq fdr data results

9.8 years ago • updated 9.7 years ago mnaymik ▴ 10

votes

replies

1.7k

views

edger data analysis

9.6 years ago Pau Marc Muñoz Torres ▴ 20

vote

replies

1.4k

views

data

9.7 years ago Bogdan ▴ 670

votes

1.4k

views

transform flow cytometry data

updated 8.0 years ago by SamGG ▴ 360 • written 8.0 years ago by cr • 0

votes

replies

3.3k

views

limma export log2 data agilent

updated 10.3 years ago by James W. MacDonald 67k • written 10.3 years ago by Jahn Davik ▴ 110

vote

replies

2.3k

views

flowCore flowjo data

updated 10.2 years ago by Greg Finak ▴ 150 • written 10.2 years ago by AJC ▴ 10

votes

1.4k

views

rna-seq data

updated 8.1 years ago by Gordon Smyth 52k • written 8.1 years ago by bioinformatics ▴ 20

votes

1.1k

views

package data

6.4 years ago divyswar01 • 0

votes

replies

2.8k

views

ExpressionSet Assay NanoString Error Data

updated 2.5 years ago by James W. MacDonald 67k • written 2.5 years ago by junli1988 • 0

votes

1.4k

views

TCGAbiolinks data normalize l

updated 3.5 years ago by Kevin Blighe ★ 4.0k • written 3.5 years ago by DANIELA • 0

votes

785

views

HELP Data

updated 2.4 years ago by Guido Hooiveld ★ 4.1k • written 2.4 years ago by mcclurejenniferc • 0

votes

replies

686

views

BAM Segmentation CINdex VCF Data

2.4 years ago raven1306 • 0

vote

replies

737

views

Cytometry R Data

2.6 years ago hamiltond ▴ 10

votes

replies

1.5k

views

omiccircos bug hg19 hg18 data

7.7 years ago matthew.bashton • 0

votes

replies

830

views

cellGrowth data

6.8 years ago muitalegal888 • 0

votes

replies

1.2k

views

data immunology software vaccinology

3.4 years ago Daniel • 0

vote

replies

2.3k

views

data package submission BiocCheck

5.5 years ago j.flesch ▴ 10

17 results • Page 1 of 1

Recent ...

Replies

Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Awards • All

Popular Question to ajglajd gajgflkadfj gl • 0

Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750