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3.0k

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limma export log2 data agilent

updated 9.6 years ago by James W. MacDonald 65k • written 9.6 years ago by Jahn Davik ▴ 110

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biseq fdr data results

9.1 years ago • updated 9.0 years ago mnaymik ▴ 10

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ExpressionSet Assay NanoString Error Data

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by junli1988 • 0

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flowCore flowjo data

updated 9.4 years ago by Greg Finak ▴ 150 • written 9.5 years ago by AJC ▴ 10

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data package submission BiocCheck

4.8 years ago j.flesch ▴ 10

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1.4k

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edger data analysis

8.8 years ago Pau Marc Muñoz Torres ▴ 20

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omiccircos bug hg19 hg18 data

7.0 years ago matthew.bashton • 0

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1.2k

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data

8.9 years ago Bogdan ▴ 670

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rna-seq data

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by bioinformatics ▴ 10

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1.1k

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TCGAbiolinks data normalize l

updated 2.8 years ago by Kevin Blighe ★ 3.9k • written 2.8 years ago by DANIELA • 0

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1.1k

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transform flow cytometry data

updated 7.3 years ago by SamGG ▴ 350 • written 7.3 years ago by cr • 0

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940

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package data

5.7 years ago divyswar01 • 0

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854

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data immunology software vaccinology

2.6 years ago Daniel • 0

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710

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cellGrowth data

6.0 years ago muitalegal888 • 0

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571

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HELP Data

updated 20 months ago by Guido Hooiveld ★ 3.9k • written 20 months ago by mcclurejenniferc • 0

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549

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Cytometry R Data

22 months ago hamiltond ▴ 10

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502

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BAM Segmentation CINdex VCF Data

20 months ago raven1306 • 0

17 results • Page 1 of 1

Recent ...

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Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Votes

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

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