Showing : genefilter • reset
1
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833
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DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but recovers many important genes
metaanalysis meanSd genefilter DESeq2
18 months ago Ndimensional ▴ 20
1
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3
replies
3.5k
views
DESeq2/genefilter compatibility with R 4.2.2
DESeq2 genefilter
2.1 years ago Morgane ▴ 10
1
vote
1
reply
851
views
Weight Array Quality before of after applying variance filtering?
limma arrays genefilter
updated 2.4 years ago by 67k • written 2.4 years ago by ▴ 40
0
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0
replies
927
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Cannot Install genefilter
genefilter
2.5 years ago Francis • 0
10
votes
23
replies
14k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
3.4 years ago • updated 2.1 years ago soda ▴ 80
0
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1
reply
897
views
collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 3.4 years ago by 67k • written 3.4 years ago by • 0
0
votes
2
replies
1.4k
views
genefilter not available for R v4.1/arm64
DESeq2 genefilter
3.4 years ago jeremymsimon ▴ 20
0
votes
1
reply
897
views
Error using simpleaffy
software error simpleaffy genefilter
updated 5.3 years ago by 67k • written 5.3 years ago by • 0
9
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10
replies
2.5k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
5.5 years ago Jurat Shahidin ▴ 80
0
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6
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2.3k
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 5.6 years ago by 67k • written 5.6 years ago by ▴ 10
0
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1
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1.6k
views
genefilter Package not available for R 3.5.2
genefilter
6.0 years ago radhikasundar520 • 0
0
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1
reply
2.3k
views
Can not install packages
ballgown genefilter RskittleBrewer
updated 6.1 years ago by ★ 6.6k • written 6.1 years ago by • 0
0
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5
replies
2.1k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 6.5 years ago by 67k • written 6.5 years ago by • 0
0
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1
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1.6k
views
Unable to compile genefilter package
bioconductor genefilter compile
updated 6.8 years ago by 67k • written 6.8 years ago by • 0
0
votes
3
replies
2.0k
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter ballgown
updated 6.9 years ago by • 0 • written 7.4 years ago by • 0
0
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1
reply
2.1k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2 filter genefilter
updated 7.1 years ago by 43k • written 7.1 years ago by • 0
1
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4
replies
2.2k
views
cran check shows that genefilter is not available
genefilter
7.1 years ago jinkaixiu ▴ 10
1
vote
3
replies
1.8k
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
7.3 years ago lirongrossmann ▴ 80
1
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5
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1.3k
views
error when trying to apply the specific gene filter.
genefilter
7.4 years ago DataFanatic ▴ 10
6
votes
5
replies
15k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 10
1
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4
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1.5k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 8.2 years ago by 67k • written 8.2 years ago by ▴ 20
3
votes
5
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2.6k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 20
4
votes
1
reply
1.2k
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
6
votes
6
replies
2.1k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 8.6 years ago by ▴ 180 • written 8.6 years ago by ▴ 20
1
vote
1
reply
1.6k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
8.6 years ago Lucy • 0
2
votes
1
reply
1.7k
views
Filtering array data with nsFilter
genefilter nsFilter
updated 8.7 years ago by 52k • written 8.7 years ago by • 0
0
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1
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1.0k
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray limma genefilter
updated 8.8 years ago by 67k • written 8.8 years ago by • 0
0
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1
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1.3k
views
nsFilter not filtering out all of the normgene->exon.
genefilter affymetrix microarrays
updated 8.8 years ago by 67k • written 8.8 years ago by • 0
2
votes
2
replies
1.4k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 9.0 years ago by ★ 13k • written 9.0 years ago by ▴ 20
4
votes
4
replies
2.5k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 9.0 years ago by ★ 13k • written 9.0 years ago by ▴ 10
4
votes
4
replies
3.0k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 20
2
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12
replies
2.8k
views
I want to order genes in GO groups
gene ontology genefilter
updated 9.2 years ago by ▴ 370 • written 9.3 years ago by ▴ 10
0
votes
2
replies
3.1k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 9.3 years ago by 67k • written 9.3 years ago by ▴ 10
0
votes
1
reply
1.7k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 9.6 years ago by • 0 • written 18.0 years ago by ▴ 170
2
votes
7
replies
1.8k
views
why genefilter does not work for me ?
R microarray genefilter
9.9 years ago Nemo ▴ 80
4
votes
4
replies
2.8k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 10.0 years ago by 52k • written 10.0 years ago by ▴ 840
7
votes
5
replies
2.3k
views
Adjusted P values
limma genefilter
updated 10.1 years ago by 52k • written 10.1 years ago by ▴ 10
2
votes
4
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1.8k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 10.2 years ago by 67k • written 10.2 years ago by ▴ 10
1
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3
replies
9.4k
views
genefilter installation error
genefilter genefilter
updated 10.3 years ago by ▴ 150 • written 10.3 years ago by ▴ 10
0
votes
1
reply
1.3k
views
selection of probes, probesets mapping to the same gene
genefilter genefilter
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ▴ 680
0
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2
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1.5k
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 10.6 years ago by ★ 4.2k • written 10.6 years ago by ▴ 190
0
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0
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1.0k
views
adjusted P-values
genefilter genefilter
10.6 years ago Guest User ★ 13k
0
votes
1
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4.1k
views
error in installing \"genefilter\"
genefilter genefilter
updated 10.6 years ago by 67k • written 10.6 years ago by ★ 13k
1
vote
1
reply
2.2k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 10.8 years ago by ★ 7.9k • written 10.8 years ago by ▴ 10
0
votes
4
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2.1k
views
genefilter kOverA filter by range
genefilter genefilter
updated 10.9 years ago by 67k • written 10.9 years ago by ▴ 220
0
votes
1
reply
1.2k
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 11.1 years ago by 67k • written 11.1 years ago by 16k
0
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3
replies
2.2k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 11.4 years ago by 67k • written 11.4 years ago by ★ 13k
0
votes
9
replies
1.7k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 11.6 years ago by 67k • written 11.6 years ago by ★ 13k
0
votes
2
replies
2.6k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 11.7 years ago by 25k • written 11.7 years ago by ▴ 30
0
votes
0
replies
1.1k
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter genefilter
11.7 years ago Andreia Fonseca ▴ 810
50 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
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Scholar to James W. MacDonald 67k
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