Showing : ggbio • reset
0
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6
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2.4k
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Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 4.5 years ago by • 0 • written 9.5 years ago by • 0
0
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5
replies
1.7k
views
circular display in ggbio for gene tracks
ggbio
8.8 years ago • updated 8.7 years ago Bogdan ▴ 670
1
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3
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1.4k
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circular display in ggbio
ggbio
8.8 years ago Bogdan ▴ 670
1
vote
11
replies
4.7k
views
Error when install ggbio
ggbio biocinstaller
updated 8.3 years ago by • 0 • written 8.4 years ago by ▴ 20
4
votes
3
replies
2.5k
views
ggbio error: Objects of type OrganismDb not supported by autoplot
GO OrganismDb ggbio GO OrganismDb ggbio
updated 9.4 years ago by ▴ 50 • written 9.7 years ago by ▴ 120
0
votes
2
replies
1.0k
views
color-coded arch intensity in ggbio
ggbio ggbio
updated 9.9 years ago by ▴ 420 • written 9.9 years ago by ▴ 670
3
votes
2
replies
1.7k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
8.1 years ago Mario Saare ▴ 20
0
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2
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1.4k
views
"for loop" and AUTOPLOT function
ggbio granges
9.4 years ago Bogdan ▴ 670
0
votes
2
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1.1k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 7.6 years ago by ▴ 10 • written 7.7 years ago by ▴ 20
2
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5
replies
3.3k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
6.8 years ago Bogdan ▴ 670
0
votes
2
replies
1.8k
views
Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 9.7 years ago by ▴ 490 • written 9.7 years ago by 1.6k
0
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3
replies
1.4k
views
help with visualizing structural variation data
ggbio ggbio
11.3 years ago Abhishek Pratap ▴ 410
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio SNP granges
updated 8.4 years ago by ★ 11k • written 8.4 years ago by • 0
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
0
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5
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1.4k
views
Graphing coverage() results
ggbio genomicalignments bam
9.2 years ago gen ▴ 30
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
6.8 years ago Didi ▴ 10
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 4.7 years ago by ★ 1.5k • written 8.9 years ago by ▴ 370
0
votes
2
replies
1.0k
views
about tracks() in ggbio
ggbio
9.0 years ago Bogdan ▴ 670
0
votes
3
replies
2.0k
views
trouble installing affycoretools for R 3.0
VariantAnnotation GO BSgenome affycoretools BSgenome VariantAnnotation ggbio GO BSgenome
updated 11.1 years ago by 65k • written 11.1 years ago by ★ 2.0k
0
votes
1
reply
1.3k
views
Error with autoplot of transcriptDB object
ggbio
9.6 years ago Mark Dunning ★ 1.1k
0
votes
1
reply
1.0k
views
status of visnab
Visualization ggbio Gviz Visualization ggbio Gviz
updated 11.0 years ago by ▴ 420 • written 11.0 years ago by ▴ 410
0
votes
6
replies
1.4k
views
pileupAsGRanges depth limit
Sequencing ggbio Sequencing ggbio
updated 11.4 years ago by 25k • written 11.4 years ago by ★ 1.1k
0
votes
1
reply
1.9k
views
plotIdeogram for non-human or mouse genome
ideogram ggbio ideogram ggbio
updated 9.7 years ago by ▴ 490 • written 9.7 years ago by ★ 1.1k
0
votes
4
replies
3.4k
views
How to combine VCF-class and data.frame with annotations
GO annotate convert ggbio GO annotate convert ggbio
written 11.7 years ago by ▴ 70
0
votes
1
reply
1.4k
views
Positional Details with Features through UniProt.ws Ultimately to display as tracks in ggbio
annotate ggbio annotate ggbio
updated 9.7 years ago by ▴ 490 • written 9.7 years ago by ▴ 30
0
votes
1
reply
1.3k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage
updated 12.0 years ago by ★ 4.2k • written 12.0 years ago by ▴ 370
0
votes
4
replies
1.9k
views
GGally ggbio conflict/bug
ggbio ggbio
updated 10.5 years ago by ★ 11k • written 10.5 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Cannot replicate circle plot vignette output in ggbio devel
software error ggbio circle plot
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 90
0
votes
1
reply
1.0k
views
Changing the x axis size using tracks (ggbio)
ggbio
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 40
2
votes
1
reply
2.1k
views
ggbio: examples of overlaying multiple assay datasets
ggbio visualization ggbio
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ▴ 190
0
votes
1
reply
1.0k
views
visualization of interactions
ggbio ggbio
updated 11.7 years ago by ▴ 420 • written 11.7 years ago by ★ 13k
1
vote
4
replies
2.4k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 8.3 years ago by ▴ 10 • written 8.3 years ago by ▴ 10
0
votes
1
reply
847
views
Granges for chromosome interactions
ggbio ggbio
updated 11.7 years ago by ★ 4.2k • written 11.7 years ago by ▴ 670
1
vote
1
reply
1.2k
views
Problems with parsing of geom_alignment()'s type column (from ggbio)
ggbio geom_alignment
updated 9.1 years ago by ★ 11k • written 9.2 years ago by ▴ 20
1
vote
1
reply
1.0k
views
Bug in ggbio's geom_alignment when using facet
ggbio facet
updated 9.1 years ago by ★ 11k • written 9.2 years ago by ▴ 20
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 8.2 years ago by ▴ 10 • written 8.3 years ago by • 0
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio bugs tracks autoplot
9.2 years ago cooketho • 0
0
votes
4
replies
1.2k
views
autoplot transcriptDb error with some regions
TranscriptDb ggbio TranscriptDb ggbio
updated 10.5 years ago by ▴ 490 • written 10.5 years ago by ★ 1.9k
1
vote
3
replies
2.0k
views
Loading alternative genomes into ggbio
ggbio
8.6 years ago daniel.antony.pass • 0
0
votes
3
replies
1.2k
views
Plots with transparent background in ggbio.
ggbio ggbio
updated 10.6 years ago by ▴ 490 • written 10.6 years ago by ★ 13k
0
votes
2
replies
1.2k
views
ggbio tracks with labelled: problem when I add a main title
Cancer ggbio Cancer ggbio
10.4 years ago Janet Young ▴ 740
0
votes
2
replies
1.7k
views
autoplot transcriptDb error with some regions
TranscriptDb biovizBase ggbio TranscriptDb biovizBase ggbio
updated 10.5 years ago by ▴ 490 • written 10.5 years ago by ★ 1.6k
0
votes
9
replies
2.5k
views
ggbio: error when updating to current release version
BiocInstaller ggbio BiocInstaller ggbio
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 80
0
votes
1
reply
1.2k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb ideogram ggbio TranscriptDb ideogram ggbio
updated 10.4 years ago by ★ 1.0k • written 10.4 years ago by ▴ 490
0
votes
1
reply
1.4k
views
ggbio package only works with h19 genome
ggbio ggplot2
updated 8.5 years ago by 65k • written 8.5 years ago by ▴ 10
0
votes
4
replies
1.4k
views
Measuring shifts in intronic expression independently of exons
GO DESeq DEXSeq ggbio GO DESeq DEXSeq ggbio
10.6 years ago James Perkins ▴ 60
0
votes
1
reply
1.5k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r ggbio ggplot2 dnaseq genomicranges
updated 8.8 years ago by ▴ 130 • written 8.8 years ago by • 0
0
votes
5
replies
1.6k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 11.2 years ago by ▴ 420 • written 11.2 years ago by ★ 11k
0
votes
5
replies
1.3k
views
ggbio and R-2.14.0
ggbio ggbio
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 30
0
votes
4
replies
1.7k
views
about GenomicRanges keepseqlevel deprecation and ggbio
GenomicRanges ggbio GenomicRanges ggbio
updated 10.8 years ago by ★ 11k • written 10.8 years ago by ▴ 90
50 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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