Showing : graph • reset
4
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1
reply
2.3k
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Gene Ontology: filtering out most informative terms from a list of GO terms
GO graph GO graph
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 30
3
votes
3
replies
1.7k
views
Can't install graph package
graph
updated 4.1 years ago by 25k • written 4.1 years ago by ▴ 10
3
votes
2
replies
2.5k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by ▴ 150
2
votes
0
replies
1.4k
views
Problem using Rgraphviz (edge weights going missing).
GO graph Rgraphviz GO graph Rgraphviz
15.6 years ago Dan Bolser ▴ 40
2
votes
4
replies
4.7k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny graph RBGL
updated 13 months ago by ▴ 10 • written 3.2 years ago by • 0
2
votes
2
replies
2.4k
views
Best practices for converting adj matrix -> graphNEL
graph adjacency matrix
7.4 years ago bryon ▴ 10
2
votes
3
replies
3.4k
views
How to convert graphNEL object into Adjacency Matrix?
graph kegggraph xml
updated 7.1 years ago by ★ 3.3k • written 7.1 years ago by • 0
2
votes
2
replies
1.8k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 40
2
votes
2
replies
2.1k
views
GO offspring consistency
annotation GO graph gene ontology
updated 9.4 years ago by 1.6k • written 9.5 years ago by • 0
2
votes
1
reply
1.9k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 6.3 years ago by • 0 • written 10.6 years ago by ★ 1.6k
1
vote
1
reply
1.4k
views
Rgraphviz and margins
graph Rgraphviz graph Rgraphviz
updated 8.3 years ago by • 0 • written 12.9 years ago by ▴ 80
1
vote
4
replies
2.1k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 6.2 years ago by • 0
1
vote
2
replies
953
views
Library for Node Influence package
Graph gene regulatory network node influence gene ranking
updated 4.4 years ago by ★ 3.9k • written 4.5 years ago by ▴ 50
1
vote
1
reply
1.1k
views
Fastest way to get the distances between pairs of graph nodes
graph rgbl dag
updated 7.5 years ago by ★ 13k • written 7.5 years ago by ▴ 110
1
vote
0
replies
994
views
GO graphs made with topGO are unreadable
GO graph topGO GO graph topGO
11.3 years ago Guest User ★ 13k
1
vote
4
replies
3.6k
views
Rgraphviz fontsize
GO graph Rgraphviz GO graph Rgraphviz
updated 15.7 years ago by 6.7k • written 15.7 years ago by ▴ 80
1
vote
1
reply
4.7k
views
edgeR: pseudocounts, logConc and logFC
Proteomics graph edgeR Proteomics graph edgeR
updated 14.1 years ago by ★ 1.1k • written 14.1 years ago by ▴ 340
1
vote
1
reply
1.8k
views
topGO Fisher test error
GO graph GO graph
updated 11.1 years ago by ▴ 400 • written 11.1 years ago by ★ 13k
1
vote
1
reply
1.1k
views
How to get the list of the components of all containers from the active RedeR session?
reder graph
updated 6.6 years ago by ▴ 10 • written 6.6 years ago by ▴ 10
0
votes
1
reply
997
views
BrainArray custom CDF repository missing in biocReposList()
Microarray cdf probe graph Microarray cdf probe graph
updated 13.0 years ago by 65k • written 13.0 years ago by ▴ 100
0
votes
0
replies
1.2k
views
Bioconductor 2.4 is released
Microarray qPCR Metabolomics Annotation Normalization graph flowCore Microarray qPCR
15.1 years ago Patrick Aboyoun ★ 1.6k
0
votes
5
replies
1.7k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
1
reply
1.1k
views
Re: Memory management in Windows 2000
Normalization affy graph Normalization affy graph
updated 21.5 years ago by ▴ 360 • written 21.5 years ago by ▴ 250
0
votes
0
replies
1.4k
views
limma Time Course Experiments question
graph limma SANTA graph limma SANTA
15.1 years ago Marcelo Laia ▴ 450
0
votes
0
replies
770
views
XML specifs for R GUIs dialog boxes
graph graph
21.5 years ago Philippe Grosjean ▴ 10
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.3 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
0
replies
1.2k
views
Bioconductor 1.2 Released
Microarray SAGE Normalization GO GUI Cancer cdf affy vsn graph AnnBuilder Microarray
21.0 years ago Jeff Gentry ★ 3.9k
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 21.0 years ago by ★ 2.9k • written 21.0 years ago by ▴ 130
0
votes
4
replies
1.3k
views
Compilation problem installing Bioconductor (RGraphviz)
graph Rgraphviz graph Rgraphviz
updated 20.9 years ago by ★ 5.5k • written 20.9 years ago by ▴ 80
0
votes
0
replies
1.0k
views
Bioconductor 1.1 Released
Preprocessing Cancer graph Preprocessing Cancer graph
21.5 years ago Jeff Gentry ★ 3.9k
0
votes
0
replies
1.1k
views
How to use the same node layout for a set of graph plots using graph and Rgraphviz?
Cancer graph Rgraphviz Cancer graph Rgraphviz
16.3 years ago Rand, Hugh ▴ 50
0
votes
0
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
17.6 years ago Martin Morgan 25k
0
votes
1
reply
908
views
some experiences and some troubles with GraphAT package
GO graph PROcess GraphAT GO graph PROcess GraphAT
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 70
0
votes
0
replies
1.2k
views
Reminder: Release 1.2 on May 28th
Microarray SAGE Normalization GO GUI vsn graph AnnBuilder Microarray SAGE Normalization
21.0 years ago Jeff Gentry ★ 3.9k
0
votes
2
replies
1.2k
views
goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
4
replies
1.2k
views
Another question Re: question on hgu95 metadata and ontoTools
GO probe affy graph ontoTools PROcess GO probe affy graph ontoTools PROcess
20.4 years ago Elisabetta Manduchi ▴ 160
0
votes
0
replies
1.4k
views
Plotting per base coverage from genomecoveragebed utility
graph graph
10.1 years ago gv ▴ 40
0
votes
1
reply
981
views
Re: limma plot error?
Normalization graph limma GeneTraffic Normalization graph limma GeneTraffic
20.4 years ago Gordon Smyth 50k
0
votes
1
reply
1.2k
views
RE: Bioconductor Digest, Vol 8, Issue 15
Microarray Clustering Cancer affy graph SAGElyzer Rgraphviz Rdbi RBGL Microarray Cancer
updated 20.6 years ago by ▴ 180 • written 20.6 years ago by ▴ 160
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
20.3 years ago • updated 20.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.4k
views
Recent changes to Bioconductor packages
Microarray Ruuid graph limma EBarrays Microarray Ruuid graph limma EBarrays
20.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.1k
views
Questions for Affy package on hist() and boxplot()
affy graph affy graph
19.3 years ago Luo, Wen ▴ 50
0
votes
1
reply
942
views
heatmap() customization
graph graph
updated 20.0 years ago by 21k • written 20.0 years ago by ▴ 300
0
votes
1
reply
880
views
SparseM not found
graph graph
updated 20.0 years ago by ★ 3.9k • written 20.0 years ago by ▴ 620
0
votes
2
replies
1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 320
0
votes
0
replies
678
views
boundary() only gives the children of the subgraph; a possible DAG
graph graph
19.7 years ago Yi-Xiong Sean Zhou ▴ 50
0
votes
1
reply
966
views
Rgraphviz intall error
graph Rgraphviz graph Rgraphviz
updated 19.7 years ago by ▴ 20 • written 19.7 years ago by ▴ 30
0
votes
0
replies
1.6k
views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
10.3 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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