Showing : microRNA • reset
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microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
16 months ago Lluís Revilla Sancho ▴ 730
1
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low counts from microRNA seq
DESeq2 microRNA HTSeq
16 months ago abhay.kanodia • 0
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4
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
18 months ago faiza • 0
1
vote
7
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1.6k
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High padj in DESeq2
deseq2 RNA-seq microRNA
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 10
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1
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Using DeSeq2 on microRNA data
deseq2 mirdeep2 microRNA differential expression analysis
updated 4.1 years ago by 42k • written 4.1 years ago by • 0
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1
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find genes near a microRNA binding site
R microRNA genes binding Site
4.8 years ago pengu447 • 0
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2
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R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 6.4 years ago by ★ 1.0k • written 6.4 years ago by • 0
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4
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Agilent microrna microaaray
agilent microarrays microrna analysis
6.7 years ago arisarkar88 ▴ 40
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833
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gene set enrichment and pathway analysis of gene expression datas
microarray microrna
7.4 years ago n3da.karami • 0
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4
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1.2k
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Error while normalizing [miRNA-1_0] Affymetrix miRNA Array cel files
microrna microarray cdfinfo
updated 7.7 years ago by 65k • written 7.7 years ago by ▴ 40
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Combining TLDA cards for normalization
normalization microrna htqpcr
7.8 years ago jamie_jabalee • 0
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1
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2.8k
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Error in file(file, "rt") : cannot open the connection - Using ExiMir Package
R eximir microrna
8.1 years ago 31sharmajittu1991 • 0
2
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2
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1.6k
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normalized read count per group from edgeR
microrna edger
8.1 years ago manoharankumar01 • 0
2
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6
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1.7k
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edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
2
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1
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3.1k
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Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 8.5 years ago by 42k • written 8.5 years ago by ▴ 20
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4
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2.5k
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
8.6 years ago mariakarand ▴ 20
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5
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2.2k
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RUVseq for microRNAs
ruvseq ruv microrna
8.8 years ago sergio.espeso-gil • 0
0
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1
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1.5k
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The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
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2
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1.2k
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help with array based microRNA data analysis
limma microRNA limma microRNA
updated 10.3 years ago by ★ 1.3k • written 10.3 years ago by ▴ 190
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3
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3.2k
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mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 10.7 years ago by ★ 7.9k • written 10.7 years ago by ▴ 10
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Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.0 years ago by 65k • written 11.0 years ago by ▴ 10
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identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
11.1 years ago Fiona ▴ 70
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4
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1.2k
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identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.1 years ago by 65k • written 11.1 years ago by ▴ 70
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1.8k
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AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.2 years ago Gordon Smyth 50k
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4
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1.1k
views
miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 70
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1.1k
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taqman versions
microRNA microRNA
updated 11.5 years ago by ▴ 120 • written 11.5 years ago by ▴ 320
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4
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1.8k
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get al microRNA target sites for a given gene
microRNA microRNA
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 840
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4
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1.7k
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Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 11.7 years ago by ★ 1.3k • written 11.8 years ago by ▴ 30
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Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
11.8 years ago Ali Mohammadian ▴ 290
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6
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1.3k
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any good R package to scan microRNA target?
microRNA microRNA
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 2.0k
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5
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extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 12.2 years ago by ★ 4.2k • written 12.2 years ago by ▴ 930
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4
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A problem about trimLRPatterns
microRNA microRNA
updated 12.2 years ago by ▴ 590 • written 12.2 years ago by ★ 2.0k
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826
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Trouble in using AgiMicroRna Package
Microarray microRNA Microarray microRNA
12.3 years ago Kannan Venugopal ▴ 10
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5
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1.5k
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Limma question
limma microRNA limma microRNA
updated 12.4 years ago by ▴ 720 • written 12.4 years ago by ▴ 30
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801
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how to analyze
affy microRNA affy microRNA
12.4 years ago Adrian Johnson ▴ 330
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6
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2.5k
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Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
12.4 years ago Peter Davidsen ▴ 210
6
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11
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2.6k
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edgeR on microRNA data
microRNA edgeR miRNA
12.6 years ago • updated 3.0 years ago Gordon Smyth 50k
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1.5k
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ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
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1
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1.2k
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loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ★ 3.9k
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align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
12.8 years ago Hervé Pagès 16k
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0
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820
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filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
12.8 years ago Viki S ▴ 20
0
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1
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976
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cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 12.8 years ago by 65k • written 12.8 years ago by ▴ 10
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1.2k
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align microRNA with custom mRNA sequences
microRNA microRNA
12.8 years ago Jason Shoemaker ▴ 80
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0
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970
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dCHip
microRNA microRNA
12.9 years ago Ayse Ulgen ▴ 30
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0
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1.4k
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Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.0 years ago chawla ▴ 190
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8
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1.6k
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microRNA hg build?
microRNA microRNA
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ★ 1.1k
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GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
13.1 years ago David ▴ 860
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8
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2.0k
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GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.1 years ago by ▴ 930 • written 13.1 years ago by ▴ 860
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1
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1.1k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ▴ 120
0
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1
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1.2k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.3 years ago by ▴ 200 • written 13.3 years ago by ▴ 120
50 results • Page 1 of 1
Recent ...
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Answer: Differential gene expression analysis results by ATpoint ★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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