Showing : minfi • reset
2
votes
1
reply
160
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 10 days ago by 65k • written 10 days ago by • 0
0
votes
4
replies
262
views
Minfi - estimatecellscount
min minfi
updated 18 days ago by 65k • written 7 weeks ago by • 0
1
vote
4
replies
228
views
minfi::read.metharray.exp
minfiData minfi
updated 23 days ago by ▴ 780 • written 25 days ago by • 0
2
votes
6
replies
1.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 6 weeks ago by ▴ 180 • written 5 months ago by ▴ 10
0
votes
2
replies
585
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 7 weeks ago by • 0 • written 12 months ago by • 0
0
votes
0
replies
217
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
10 weeks ago Felix • 0
0
votes
1
reply
192
views
Matrix multiplication error to estimate telomere length
methylclockData minfi methylclock minfidata
updated 11 weeks ago by 65k • written 11 weeks ago by • 0
0
votes
7
replies
489
views
error in reading idat files and creating rgset
minfi MethylationArray
updated 3 months ago by 65k • written 3 months ago by • 0
0
votes
2
replies
590
views
EPIC array hg38 annotation?
minfi DMRcate
3 months ago mycetes • 0
0
votes
14
replies
2.0k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 3 months ago by • 0 • written 8 months ago by • 0
0
votes
11
replies
3.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 3 months ago by ▴ 180 • written 7.1 years ago by ★ 2.0k
0
votes
0
replies
272
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
5 months ago kyj2226 • 0
3
votes
2
replies
478
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
5 months ago kyj2226 • 0
0
votes
1
reply
348
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 5 months ago by ▴ 780 • written 5 months ago by • 0
6
votes
5
replies
6.2k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0 minfi
updated 6 months ago by ▴ 10 • written 14 months ago by ▴ 50
0
votes
5
replies
967
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi limma
7 months ago dorota.komar • 0
0
votes
2
replies
688
views
minfi differential methylation analysis errors
minfi
7 months ago matthew.sinton • 0
0
votes
3
replies
603
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
0
votes
1
reply
408
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC minfi
updated 8 months ago by 65k • written 8 months ago by • 0
0
votes
9
replies
3.1k
views
clarification about bumphunter value output
minfi bumphunter
updated 11 months ago by • 0 • written 6.2 years ago by • 0
0
votes
2
replies
1.5k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
updated 12 months ago by • 0 • written 8.4 years ago by • 0
0
votes
3
replies
973
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 12 months ago by ▴ 780 • written 12 months ago by ▴ 10
1
vote
8
replies
3.4k
views
Normalization starting from beta values in minfi
methylation minfi
written 8.0 years ago by ▴ 290
0
votes
1
reply
557
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 13 months ago by 50k • written 13 months ago by • 0
0
votes
0
replies
417
views
cpgCollapse error
450K blockfinder cpgCollapse minfi
14 months ago edward.esiribloom • 0
0
votes
1
reply
628
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 14 months ago by 65k • written 14 months ago by • 0
3
votes
6
replies
2.1k
views
Complex Model Design with Bumphunter (Minfi)
minfi bumphunter model.matrix linear model
updated 14 months ago by • 0 • written 8.8 years ago by ▴ 370
0
votes
5
replies
1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 14 months ago by • 0
0
votes
4
replies
1.0k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 14 months ago by 65k • written 14 months ago by • 0
6
votes
3
replies
9.9k
views
Minfi issue: return code from pthread_create() is 22
minfi 450k
updated 14 months ago by • 0 • written 4.8 years ago by ▴ 10
1
vote
3
replies
861
views
Analysing Genome Studio .txt files with minfi
minfi
updated 14 months ago by 65k • written 14 months ago by • 0
0
votes
1
reply
723
views
Minfi::read.metharray.sheet, problem with pattern defined in non-local csv file
PatternLogic read.metharray.sheet list.files minfi
updated 15 months ago by 65k • written 15 months ago by • 0
2
votes
3
replies
954
views
GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 16 months ago by ▴ 40 • written 16 months ago by • 0
0
votes
1
reply
1.0k
views
minfi read.metharray.sheet error
minfi
updated 17 months ago by 65k • written 17 months ago by • 0
1
vote
5
replies
4.2k
views
minfi - error when reading idat files
minfi methylation
updated 20 months ago by • 0 • written 6.9 years ago by ▴ 10
0
votes
1
reply
947
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile noob Normalization minfi minfiDataEPIC
updated 21 months ago by 65k • written 21 months ago by • 0
0
votes
0
replies
550
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation wateRmelon Computation minfi
21 months ago calen.p.ryan • 0
0
votes
2
replies
1.2k
views
Error in read.metharray.exp
minfi epic microarray bioconductor
updated 22 months ago by • 0 • written 6.2 years ago by • 0
0
votes
0
replies
715
views
Error: 'bumphunter()' only supports matrix-backed minfi objects.
bumphunter minfi genomi
23 months ago runye • 0
0
votes
1
reply
917
views
what is the format of DMPfinder in minfi package
minfi
updated 23 months ago by ▴ 780 • written 24 months ago by • 0
0
votes
3
replies
1.2k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
2.1 years ago • updated 2.0 years ago ramonfallon ▴ 20
0
votes
2
replies
2.7k
views
Illumina 450k Manifest: Probes Mapping to Multiple RefGene Groups and Names
illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation
updated 2.1 years ago by • 0 • written 8.6 years ago by ▴ 10
0
votes
0
replies
938
views
Annotation Illumina Infinium Mouse Methylation
Illumina minfi IlluminaHumanMethylationEPICmanifest
2.1 years ago octaviompa • 0
0
votes
0
replies
651
views
Minfi package: controlStripPlot colors
minfi
2.2 years ago Rebecca • 0
0
votes
1
reply
848
views
Over 800,000 probes failing to meet Detection P-value - minfi
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 failingprobes detectionP minfi
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
0
votes
1
reply
893
views
EPIC ARRAY ANALYSIS
minfiDataEPIC #SexPrediction minfi
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
0
votes
0
replies
752
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
2.8 years ago ponche_de_kiwi • 0
3
votes
6
replies
1.7k
views
Minfi can't combineArrays
RGset combinearrays 450k minfi
updated 2.8 years ago by 65k • written 2.8 years ago by • 0
0
votes
0
replies
772
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
3.0 years ago kyleyxw • 0
0
votes
1
reply
1.4k
views
conumee (for EPIC): query intensities not given for all probes
IlluminaHumanMethylationEPICmanifest minfi conumee
updated 3.0 years ago by ▴ 40 • written 3.1 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
United States, 15 minutes ago
United States, 15 minutes ago
United States, 31 minutes ago
United States, 33 minutes ago
EMBL Heidelberg, 34 minutes ago
Traffic: 699 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6