Showing : normalization • reset
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Error with Rsubread at first index: normalizePath(path.expand(path), winslash, mustWork)
normalization
6.2 years ago peter.r.hoyt • 0
1
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3
replies
870
views
Is DESeq2 normalisation method appropriate for datasets with multiple cell types?
deseq2 normalization
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 10
0
votes
1
reply
698
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Question regarding p-values in deseq2
deseq2 p-values normalization
updated 6.2 years ago by 43k • written 6.2 years ago by • 0
0
votes
1
reply
665
views
library normalization for DESeq2 using mapping proportions
deseq2 normalization
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 90
2
votes
6
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5.9k
views
removing genes before RNA-seq normalization
edger deseq2 normalization removing genes
updated 3.8 years ago by 53k • written 6.2 years ago by ▴ 90
0
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2
replies
1.9k
views
Total Area Sum Intensity based Normalization for label-free quantitative proteomics
normalization proteomics label-free
6.2 years ago amolares • 0
0
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8
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1.2k
views
Variance assumptions in DESeq2 with blocks of linkage disequilibrium/chromosomal inversions
deseq2 normalization
updated 6.3 years ago by 43k • written 6.3 years ago by • 0
1
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5
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1.9k
views
edgeR or DESeq2 between duplicated chromosomes in the same individual
deseq2 edgeR normalization DGE
updated 6.3 years ago by 53k • written 6.3 years ago by ▴ 10
2
votes
2
replies
3.9k
views
DESeq2: design = ~1 For Normalisation Only.
deseq2 limma normalization tcga rnaseq
updated 6.3 years ago by 43k • written 6.3 years ago by • 0
0
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6
replies
2.0k
views
Opening Illumina HT12 V3.0 Data from GEO
limma normalization GEO
6.3 years ago FL512 • 0
1
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1
reply
1.4k
views
DESeq Normalisation, miRNASeq
deseq2 normalization miRNASeq
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
0
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5
replies
842
views
Differential expression analyses
normalization deseq2
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
1
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2
replies
1.5k
views
The order used in common practce? batch effect removel and normalization
normalization batch effect
updated 6.4 years ago by ▴ 420 • written 6.4 years ago by ▴ 10
1
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6
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2.6k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar CyTOF normalization
updated 6.4 years ago by ★ 29k • written 6.4 years ago by • 0
4
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3
replies
5.2k
views
Differential gene expression anlaysis?
rnaseq R normalization
updated 6.4 years ago by 53k • written 6.4 years ago by ▴ 30
0
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1
reply
910
views
Use arrayQualityMetrics package normalized cel file the number of samples has been reduced
normalization arrayQualityMetrics
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
0
votes
2
replies
1.0k
views
Combining different arrays in analysis
array R normalization
updated 6.4 years ago by 68k • written 6.4 years ago by ▴ 30
1
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4
replies
5.0k
views
How to install BiocManger commandline ?
normalization
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
1
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5
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2.0k
views
DESeq2: Normalization of allele specific counts in RNA-seq
deseq2 rnaseq allele-specific normalization
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 20
0
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1
reply
2.3k
views
Different Expression Analysis with EDASeq,DESeq2,edgeR,RUVSeq
deseq2 normalization RUVg edger
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
2
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4
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1.7k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 6.5 years ago by ▴ 30 • written 6.5 years ago by ▴ 10
0
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1
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1.5k
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Using VST normalized values for "external" single gene analysis
VST normalization deseq2
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
0
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1
reply
458
views
how raw data is processed after estimation of mean-variation relation?
normalization deseq2
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
2
votes
1
reply
2.3k
views
scran: excluding genes with extremely high expression during normalization?
single-cell RNA-seq scran normalization
updated 6.5 years ago by ★ 29k • written 6.5 years ago by • 0
8
votes
5
replies
5.6k
views
the normalization methods of MRN and TMM methods supplied by DESeq2 and edgeR
normalization DESeq2 edgeR
updated 6.5 years ago by 53k • written 6.5 years ago by ▴ 10
7
votes
4
replies
3.3k
views
RNA-seq normalization without filtering
deseq2 edger normalization RNAseq
updated 6.5 years ago by ★ 13k • written 6.5 years ago by ▴ 50
1
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5
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4.8k
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how to get normalized count data from edgeR using TMM methods
edger normalization
6.5 years ago 15958021290 ▴ 10
4
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4
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6.3k
views
TMM Normalization: DESeqDataSet: some values in assay are negative
deseq2 deseq normalization
updated 6.5 years ago by ▴ 40 • written 6.5 years ago by • 0
0
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3
replies
1.2k
views
Most (90%) DE genes of a contrast were upregulated: implication on the assumptions of TMM-normalisation?
limma edger normalization
updated 6.5 years ago by 53k • written 6.5 years ago by ▴ 280
0
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0
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1.2k
views
using gene expression matrix for TCseq package to cluster genes
TCseq microwarray cluster counts normalization
6.5 years ago bioyas ▴ 10
3
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3
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1.4k
views
DESeq2: Sample outlier patterns 'switching' after normalization
deseq2 normalization
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 40
0
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1
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1.6k
views
Conditional Quantile Normalization (cqn) error
cqn normalization conditionalquantilenormalization atac-seq
updated 6.6 years ago by ★ 6.5k • written 6.6 years ago by • 0
0
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0
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1.7k
views
StatTarget Error in order(order) : argument 1 is not a vector
normalization
6.6 years ago yohann.clement • 0
1
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2
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1.1k
views
Microarray Data Analysis CDF Problem
microarray normalization
updated 6.6 years ago by ★ 4.1k • written 6.6 years ago by • 0
0
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2
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1.5k
views
R: rma() function error
rma normalization microarray
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
0
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1
reply
1.1k
views
Hope for help about quantro and qsmooth-library size normalization
normalization quantro q'smooth library size normalization
6.6 years ago Apr • 0
0
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0
replies
1.2k
views
Mfuzz time-series design
mfuzz normalization
6.6 years ago xizhang • 0
0
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1
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1.4k
views
[DESeq2] LFC shrinkage and p-adjusted output
deseq2 normalization
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
5
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3
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2.0k
views
Combining counts from non-replicate samples in RNA-Seq analysis for a synergistic system
edger normalization counts RNA-seq
updated 6.6 years ago by ★ 29k • written 6.6 years ago by • 0
1
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4
replies
1.8k
views
tximport from Galaxy output
normalization tximport
updated 4.2 years ago by • 0 • written 6.6 years ago by ▴ 20
1
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2
replies
3.2k
views
WGCNA on methylation data
normalization DNA methylation WGCNA
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by • 0
1
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12
replies
2.2k
views
RNA-Seq and edgeR: remarkable differences between cpms and fitted values
RNA-Seq edger fitted values differential expression normalization
updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 90
2
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6
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1.6k
views
DESeq2 analysis of no-normalized data yielded biased results
deseq2 normalization
6.7 years ago Victor Chano • 0
2
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1
reply
2.2k
views
Normalize within-/between-samples RNA-seq counts to weight networks
normalization CQN deseq2 RNA-seq network
updated 6.7 years ago by 43k • written 6.7 years ago by • 0
0
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1
reply
1.3k
views
Unable to run dmp <- dmpFinder() function with R 3.6
normalization News minfi
updated 6.7 years ago by 4.3k • written 6.7 years ago by • 0
0
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1
reply
614
views
Some genes are filtered after DESeq2 normalization
deseq2 normalization
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
1
reply
1.2k
views
Robust FPM with normalization factors (from tximport)?
deseq2 tximport normalization
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
7
replies
1.9k
views
How to read Illumina data used in the MACQ project (GSE5350)
microarray normalization Illumina data MACQ project gene expression
updated 6.8 years ago by 53k • written 6.8 years ago by • 0
3
votes
12
replies
5.4k
views
ComBat normalization for batch effect change 0 values
ComBat batch effect sva normalization
updated 6.8 years ago by 68k • written 6.8 years ago by ▴ 10
0
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0
replies
554
views
Where can we find the sample data i.e. "test.expressiondata.txt" used in the TissueEnrich? It is showing error with my data "Error in read.table....l…
normalization tissue-specific genes TissueEnrich Package
updated 6.8 years ago by 4.3k • written 6.8 years ago by • 0
1,761 results • Page 5 of 36
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Answer: DiffBind differential analysis
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