Showing : org.hs.eg.db • reset
0
votes
2
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460
views
org.Hs.eg.db issue
org.Hs.eg.db
written 3 months ago by • 0
0
votes
1
reply
306
views
library org.Hs.eg.db failing to install
org.Hs.eg.db
updated 7 weeks ago by 68k • written 7 weeks ago by • 0
2
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10
replies
2.1k
views
incomplete official symbol mitochondrial genes in org.Hs.eg.db?
org.Hs.eg.db
updated 5 months ago by 68k • written 5 months ago by ★ 4.1k
0
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1
reply
693
views
installing "org.Hs.eg.db",go error
org.Hs.eg.db
updated 8 months ago by 4.1k • written 8 months ago by • 0
0
votes
2
replies
997
views
Fail to install hgu133plus2.db
org.Hs.eg.db hgu133plus2
updated 9 months ago by 68k • written 9 months ago by • 0
0
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0
replies
503
views
Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
DeconRNASeq AnnotationDbi org.Hs.eg.db
9 months ago chunglee13 • 0
2
votes
4
replies
898
views
Use of data packages in containers
org.Hs.eg.db
updated 15 months ago by ▴ 760 • written 16 months ago by ▴ 20
0
votes
1
reply
906
views
Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
2
replies
2.0k
views
Download package ' org.Hs.eg.db 'when a problem emerged
org.Hs.eg.db
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
2
votes
3
replies
2.2k
views
org.Hs.eg.db gives more than one ENTREZID for a gene symbol
org.Hs.eg.db AnnotationDbi
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
1
reply
875
views
REFSEQ identifiers XP_047XXXXXX do not have ENTREZID within org.Hs.eg.db
org.Hs.eg.db
updated 2.6 years ago by 52k • written 2.6 years ago by • 0
0
votes
3
replies
2.2k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
2.7 years ago sandmann.t ▴ 70
1
vote
1
reply
1.9k
views
org.Hs.eg.db，Error: could not find function ".libPath"
org.Hs.eg.db
updated 3.0 years ago by ★ 3.4k • written 3.0 years ago by • 0
5
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13
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6.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.1 years ago by ▴ 50 • written 3.1 years ago by • 0
4
votes
6
replies
3.6k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub OrganismDbi org.Hs.eg.db
updated 3.1 years ago by 52k • written 3.1 years ago by • 0
1
vote
3
replies
4.5k
views
Error in installing org.Hs.eg.db
org.Hs.eg.db org.H
3.4 years ago 2041792073 • 0
0
votes
1
reply
2.7k
views
problem in installing "org.Hs.eg.db" package
org.Hs.eg.db
updated 3.4 years ago by 4.1k • written 3.4 years ago by • 0
1
vote
2
replies
1.7k
views
The RSQLite package fails to be installed
RSQLite org.Hs.eg.db
3.7 years ago chenghaomai • 0
1
vote
2
replies
1.5k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
0
votes
3
replies
2.3k
views
Issue "one-to-many" with org.Hs.eg.db
org.Hs.eg.db
updated 4.0 years ago by ★ 4.1k • written 4.0 years ago by • 0
1
vote
2
replies
2.2k
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
4.0 years ago Rodrigo • 0
0
votes
1
reply
1.2k
views
can NOT library ‘org.Hs.eg.db’
org.Hs.eg.db
updated 4.0 years ago by ★ 6.6k • written 4.0 years ago by ▴ 30
44
votes
29
replies
13k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 4.0 years ago by ▴ 130 • written 4.0 years ago by ▴ 160
6
votes
15
replies
7.0k
views
Couldn't load org.Hs.eg.db
org.Hs.eg.db
updated 4.0 years ago by • 0 • written 4.0 years ago by ▴ 30
5
votes
3
replies
3.5k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
4.1 years ago sgupt46 ▴ 10
3
votes
2
replies
2.2k
views
Error when using org.Hs.eg.db package
org.Hs.eg.db
updated 4.1 years ago by 68k • written 4.1 years ago by • 0
0
votes
4
replies
4.6k
views
Problem with install installation("org.Hs.eg.db") package
org.Mm.eg.db org.Hs.eg.db
4.1 years ago Eslam • 0
0
votes
1
reply
2.3k
views
problem of install packages "org.Hs.eg.db"
org.Hs.eg.db
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
11
votes
13
replies
5.7k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
4.4 years ago • updated 4.2 years ago rohitsatyam102 ▴ 20
0
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0
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947
views
Regarding Genome versions
org.Hs.eg.db BSgenome.Hsapiens.UCSC.hg38
4.2 years ago Konstantinos Yeles ▴ 80
4
votes
2
replies
2.0k
views
ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
AnnotationDbi EnsDb.Hsapiens org.Hs.eg.db
updated 4.3 years ago by ★ 2.1k • written 4.3 years ago by • 0
5
votes
7
replies
3.5k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 4.3 years ago by 52k • written 4.3 years ago by • 0
2
votes
2
replies
4.2k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 4.3 years ago by ★ 2.1k • written 4.3 years ago by • 0
6
votes
4
replies
3.2k
views
Annotation with org.Hs.eg.db Genome Build 38
AnnotationDbi org.Hs.eg.db
4.4 years ago Bine ▴ 50
2
votes
2
replies
3.4k
views
Error while installing "org.Hs.eg.db"
org.Hs.eg.db
4.4 years ago sevencds ▴ 10
2
votes
2
replies
1.2k
views
Annotation: Use of org.Hs.egCHR to map Gene Entrez to Chromosome
org.Hs.egCHR org.Hs.eg.db
4.4 years ago Bine ▴ 50
5
votes
3
replies
3.5k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
4.4 years ago Emilia ▴ 40
0
votes
2
replies
1.8k
views
Error in installing org.Hs.eg.db
software error org.Hs.eg.db win10
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
0
votes
1
reply
1.2k
views
After "DBI" and "AnnotationDbi" are installed, the AnnotationDbi dependency package is still not available when "org.hs.eg.db" is installed
org.hs.eg.db AnnotationDbi
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
1
vote
1
reply
1.3k
views
Error with installation of org.Hs.eg.db
software error org.Hs.eg.db
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
1
vote
6
replies
2.5k
views
why org.Hs.egGO2ALLEGS contain genes number difference from GO database?
org.Hs.eg.db org.Hs.egGO2ALLEGS
updated 2.8 years ago by • 0 • written 5.7 years ago by • 0
0
votes
1
reply
1.4k
views
org.Hs.eg.db can not be downloaded
org.Hs.eg.db
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
2
votes
5
replies
1.3k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
4
votes
5
replies
2.0k
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 10
3
votes
3
replies
6.3k
views
failing to install the package org.Hs.eg.db in R (version 3.5.2 )
org.Hs.eg.db AnnotationDbi
updated 2.2 years ago by • 0 • written 6.2 years ago by • 0
0
votes
1
reply
1.9k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
6.4 years ago natske ▴ 10
2
votes
1
reply
2.0k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
4
votes
3
replies
2.3k
views
Gene-GO-term relationship discrepancy between org.Hs.eg.db and geneontology.org
org.hs.eg.db
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
1
reply
2.2k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
1
vote
1
reply
1.2k
views
genes in rhesus genome (ref. TxDb.Mmulatta.UCSC.rheMac8.refGene)
org.hs.eg.db org.mmu.eg.db
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 120
50 results • Page 1 of 1
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Replies
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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