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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 90
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Job: Bioconductor Core developers group opening
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2.4 years ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
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updated 3.0 years ago by 67k • written 3.0 years ago by • 0
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python and R
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updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
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3.7 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
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Load data with rhdf5
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
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updated 5.5 years ago by ▴ 30 • written 5.5 years ago by ▴ 10
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5.5 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
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5.8 years ago Shamith.Samarajiwa ▴ 180
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6.0 years ago careers • 0
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6.5 years ago l.brown ▴ 10
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Python functionality feature request
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updated 6.5 years ago by 25k • written 6.5 years ago by • 0
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6.9 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
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7.0 years ago ematsen ▴ 20
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7.8 years ago Shamith.Samarajiwa ▴ 180
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8.5 years ago clif.duhn • 0
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
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8.8 years ago • updated 8.5 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
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9.0 years ago Doe, Aimee ▴ 40
5
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Convertion of indexed bam file to tsv file format
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updated 9.3 years ago by 16k • written 9.3 years ago by • 0
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
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9.3 years ago Fiona ▴ 70
3
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4
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seq2pathway error on Mac OS X
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9.4 years ago termanini ▴ 10
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Job: Calling all Clinical Genomic Scientist
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23 results • Page 1 of 1
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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