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Comment: Not able to download recount3 data
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Please don't reopen that issue thread, as it will ping lots of people.
Can you try using the newly documented Amazon AWS mirror?
```R
lib…
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Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this?
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I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
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The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
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ATpoint
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That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
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