Showing : rnaseqgene • reset
3
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5
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7.6k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by • 0
0
votes
2
replies
5.1k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.0 years ago greg.mulhearn • 0
0
votes
6
replies
3.9k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
8.5 years ago JunLVI ▴ 40
0
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2
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3.1k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
2
votes
5
replies
3.0k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
8.1 years ago cirisarri95 • 0
0
votes
7
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3.0k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
6
votes
8
replies
2.5k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by • 0
0
votes
1
reply
2.0k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
4
votes
1
reply
1.9k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 2.5 years ago by 41k • written 2.5 years ago by ▴ 10
0
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4
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1.8k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 7.9 years ago by • 0 • written 7.9 years ago by • 0
3
votes
2
replies
1.8k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
0
votes
1
reply
1.8k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 7.9 years ago by ★ 6.8k • written 7.9 years ago by ▴ 20
0
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3
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1.7k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
9.1 years ago Cheng-Yuan Kao ▴ 100
2
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2
replies
1.6k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
2.9 years ago SUMIT • 0
0
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3
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1.6k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 17 months ago by 65k • written 17 months ago by • 0
2
votes
5
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1.6k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 6.0 years ago by 3.8k • written 6.0 years ago by • 0
6
votes
10
replies
1.5k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 2.5 years ago by 41k • written 2.5 years ago by ▴ 20
1
vote
6
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1.4k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
3.2 years ago Seaweed • 0
0
votes
2
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1.3k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 6.1 years ago by ▴ 160 • written 6.1 years ago by • 0
1
vote
3
replies
1.3k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
5.4 years ago • updated 5.3 years ago melkile26 • 0
0
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0
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1.2k
views
Minor error in the RNASeqGene workflow
rnaseqgene
9.2 years ago snf ▴ 10
1
vote
2
replies
1.2k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
0
votes
2
replies
913
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
5.1 years ago courtney.stairs • 0
3
votes
3
replies
867
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 3.9 years ago by 41k • written 3.9 years ago by ▴ 40
0
votes
1
reply
861
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.3 years ago by ★ 4.0k • written 2.3 years ago by • 0
2
votes
2
replies
810
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.5 years ago • updated 11 months ago diangomaiga • 0
1
vote
2
replies
790
views
toptable sort .by set
limma rnaseqGene
23 months ago snowmattin • 0
1
vote
3
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784
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 15 months ago by 41k • written 15 months ago by • 0
0
votes
2
replies
783
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 9 months ago by 41k • written 9 months ago by • 0
1
vote
3
replies
765
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 4.3 years ago by 41k • written 4.3 years ago by ★ 1.5k
0
votes
0
replies
731
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.2 years ago Bogdan ▴ 670
3
votes
5
replies
605
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 7 weeks ago by 41k • written 9 weeks ago by ▴ 10
1
vote
4
replies
541
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 5 months ago by 41k • written 5 months ago by ▴ 60
5
votes
6
replies
530
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
3 months ago Shaimaa Gamal • 0
0
votes
2
replies
259
views
RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 5 weeks ago by 50k • written 6 weeks ago by • 0
2
votes
1
reply
209
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 11 weeks ago by 41k • written 12 weeks ago by ▴ 20
36 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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