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Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati
by
Mei
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I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…
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Arctic
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Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
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by
Aaron Lun
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It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2
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ATpoint
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Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
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Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
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