Showing : software • reset
2
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1
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165
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News: Bioconductor 3.22 Released!
release Release Bioconductor Software
written 5 weeks ago by 4.2k
0
votes
0
replies
556
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News: Bioconductor 3.21 Release Schedule Important Deadlines Approaching
Software Release release
8 months ago shepherl 4.2k
1
vote
0
replies
1.4k
views
News: Bioconductor 3.20 is Released!
Bioconductor Release Software
13 months ago shepherl 4.2k
0
votes
11
replies
2.6k
views
News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
21 months ago • updated 13 months ago shepherl 4.2k
3
votes
4
replies
2.7k
views
News: Bioconductor 3.20 Release Schedule
software release Release
updated 7 months ago by • 0 • written 15 months ago by 4.2k
0
votes
1
reply
1.6k
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Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
written 3.0 years ago by ★ 3.4k
4
votes
0
replies
1.6k
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
19 months ago shepherl 4.2k
0
votes
1
reply
1.6k
views
News: Bioconductor 3.19 Release Schedule
Release release Software
21 months ago • updated 20 months ago shepherl 4.2k
5
votes
1
reply
1.9k
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 2.1 years ago by 4.2k
2
votes
1
reply
2.4k
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq microbiome Software
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by ▴ 10
0
votes
0
replies
1.6k
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News: Bioconductor 3.18 Release Schedule
Release Software release
2.3 years ago shepherl 4.2k
0
votes
1
reply
802
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Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
1
vote
8
replies
2.1k
views
News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 6.7 years ago by 4.2k
0
votes
0
replies
1.2k
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
2.6 years ago shepherl 4.2k
0
votes
0
replies
1.1k
views
News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
2.7 years ago shepherl 4.2k
3
votes
6
replies
1.8k
views
News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 2.7 years ago by • 0 • written 2.8 years ago by 4.2k
1
vote
0
replies
1.4k
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News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
3.1 years ago shepherl 4.2k
0
votes
0
replies
1.2k
views
News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release Devel Bioconductor Software
3.2 years ago shepherl 4.2k
8
votes
0
replies
1.4k
views
News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
3.6 years ago shepherl 4.2k
0
votes
0
replies
1.0k
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release Software Bioconductor Devel
3.7 years ago shepherl 4.2k
0
votes
5
replies
2.0k
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News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
4.2 years ago • updated 3.6 years ago shepherl 4.2k
8
votes
0
replies
1.5k
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News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
4.1 years ago shepherl 4.2k
0
votes
0
replies
1.4k
views
Job: Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data immunology software vaccinology
4.2 years ago Daniel • 0
5
votes
0
replies
1.4k
views
News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
4.6 years ago • updated 4.5 years ago shepherl 4.2k
2
votes
2
replies
2.1k
views
News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
5.0 years ago • updated 4.6 years ago shepherl 4.2k
4
votes
0
replies
1.4k
views
News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
5.1 years ago shepherl 4.2k
1
vote
2
replies
1.9k
views
News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
5.2 years ago • updated 5.1 years ago shepherl 4.2k
0
votes
0
replies
1.5k
views
Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
5.1 years ago Vincent J. Carey, Jr. 6.7k
2
votes
4
replies
1.7k
views
Bioconductor package development
package R software development
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
3
votes
0
replies
1.9k
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
5.3 years ago • updated 5.2 years ago shepherl 4.2k
0
votes
2
replies
1.2k
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 5.3 years ago by 4.2k • written 5.3 years ago by • 0
0
votes
0
replies
1.4k
views
News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
5.5 years ago shepherl 4.2k
0
votes
2
replies
1.3k
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
0
votes
3
replies
1.6k
views
News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 5.6 years ago by ▴ 160 • written 5.7 years ago by 4.2k
4
votes
0
replies
1.2k
views
News: Bioconductor 3.11 is Released!
software bioconductor release packages News
5.6 years ago shepherl 4.2k
0
votes
0
replies
1.3k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
5.8 years ago shepherl 4.2k
0
votes
1
reply
1.3k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
5.9 years ago shepherl 4.2k
1
vote
1
reply
1.5k
views
How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 6.0 years ago by ▴ 10 • written 6.0 years ago by ▴ 40
0
votes
0
replies
1.3k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
6.1 years ago shepherl 4.2k
0
votes
2
replies
2.6k
views
News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
6.2 years ago • updated 6.1 years ago shepherl 4.2k
2
votes
2
replies
1.5k
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
6.1 years ago shepherl 4.2k
6
votes
0
replies
1.4k
views
News: Bioconductor 3.10 is released!!
release software packages bioconductor News
6.1 years ago shepherl 4.2k
0
votes
0
replies
1.4k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
6.3 years ago • updated 6.2 years ago shepherl 4.2k
2
votes
0
replies
2.8k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
6.2 years ago Laurent Gatto 1.6k
0
votes
1
reply
1.4k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
6.4 years ago • updated 6.3 years ago shepherl 4.2k
0
votes
0
replies
1.1k
views
Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
6.5 years ago jmaanaki • 0
0
votes
3
replies
1.6k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
6.5 years ago shepherl 4.2k
0
votes
1
reply
1.3k
views
News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
6.6 years ago • updated 6.5 years ago shepherl 4.2k
0
votes
1
reply
1.7k
views
News: List of Deprecated Package Bioc 3.9
deprecate release devel software experimentdata News
6.8 years ago shepherl 4.2k
0
votes
1
reply
1.6k
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
57 results • Page 1 of 2
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
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