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News:
Bioconductor 3.21 Release Schedule Important Deadlines Approaching
Software
Release
release
6 months ago
shepherl
4.2k
1
vote
0
replies
1.2k
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
10 months ago
shepherl
4.2k
0
votes
11
replies
2.3k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
19 months ago • updated 11 months ago
shepherl
4.2k
3
votes
4
replies
2.5k
views
News:
Bioconductor 3.20 Release Schedule
software
release
Release
updated 4 months ago by
randyprice13102000
• 0 • written 12 months ago by
shepherl
4.2k
0
votes
1
reply
1.5k
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
written 2.8 years ago by
Robert Castelo
★ 3.4k
4
votes
0
replies
1.3k
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
17 months ago
shepherl
4.2k
0
votes
1
reply
1.5k
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
18 months ago
shepherl
4.2k
5
votes
1
reply
1.7k
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 23 months ago by
shepherl
4.2k
2
votes
1
reply
2.3k
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq
microbiome
Software
updated 2.0 years ago by
ATpoint
★ 4.9k • written 2.0 years ago by
HULFRED
▴ 10
0
votes
0
replies
1.4k
views
News:
Bioconductor 3.18 Release Schedule
Release
Software
release
2.1 years ago
shepherl
4.2k
0
votes
1
reply
755
views
Generate false reads for testing
mgu74bv2cdf
Software
Alignment
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
Franck RICHARD
• 0
1
vote
8
replies
2.0k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.5 years ago by
shepherl
4.2k
0
votes
0
replies
1.2k
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
2.4 years ago
shepherl
4.2k
0
votes
0
replies
1.0k
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
2.5 years ago
shepherl
4.2k
3
votes
6
replies
1.7k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 2.5 years ago by
darrelvanhoy
• 0 • written 2.6 years ago by
shepherl
4.2k
1
vote
0
replies
1.3k
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
2.9 years ago
shepherl
4.2k
0
votes
0
replies
1.1k
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
3.0 years ago
shepherl
4.2k
8
votes
0
replies
1.3k
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
3.4 years ago
shepherl
4.2k
0
votes
0
replies
948
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
3.5 years ago
shepherl
4.2k
0
votes
5
replies
1.9k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
3.9 years ago • updated 3.4 years ago
shepherl
4.2k
8
votes
0
replies
1.4k
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
3.9 years ago
shepherl
4.2k
0
votes
0
replies
1.3k
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
4.0 years ago
Daniel
• 0
5
votes
0
replies
1.3k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
4.3 years ago
shepherl
4.2k
2
votes
2
replies
2.0k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
4.8 years ago • updated 4.4 years ago
shepherl
4.2k
4
votes
0
replies
1.3k
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
4.9 years ago
shepherl
4.2k
1
vote
2
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
5.0 years ago • updated 4.9 years ago
shepherl
4.2k
0
votes
0
replies
1.5k
views
Job:
R programmer position in genetic epidemiology/bioconductor
genetics
genomics
software
Job
4.9 years ago
Vincent J. Carey, Jr.
6.7k
2
votes
4
replies
1.6k
views
Bioconductor package development
package
R
software
development
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Dany
• 0
3
votes
0
replies
1.9k
views
News:
List of Deprecated Packages for Bioc3.12
annotation
software
experiment data
deprecated
News
5.1 years ago • updated 5.0 years ago
shepherl
4.2k
0
votes
2
replies
1.2k
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 5.1 years ago by
shepherl
4.2k • written 5.1 years ago by
gnanaprakash.s
• 0
0
votes
0
replies
1.3k
views
News:
List of Deprecated Packages for Bioc3.12
deprecated
experiment data
software
annotation
News
5.3 years ago
shepherl
4.2k
0
votes
2
replies
1.2k
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation
software
TxDb
updated 5.3 years ago by
James W. MacDonald
68k • written 5.3 years ago by
AmalAbdel-Aziz
• 0
0
votes
3
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 5.4 years ago by
kayla.interdonato
▴ 160 • written 5.5 years ago by
shepherl
4.2k
4
votes
0
replies
1.1k
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
5.4 years ago
shepherl
4.2k
0
votes
0
replies
1.3k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.6 years ago
shepherl
4.2k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.7 years ago
shepherl
4.2k
1
vote
1
reply
1.5k
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 5.8 years ago by
anamaria
▴ 10 • written 5.8 years ago by
jol.espinoz
▴ 40
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.9 years ago
shepherl
4.2k
0
votes
2
replies
2.4k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
6.0 years ago • updated 5.9 years ago
shepherl
4.2k
2
votes
2
replies
1.4k
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
5.9 years ago
shepherl
4.2k
6
votes
0
replies
1.3k
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
5.9 years ago
shepherl
4.2k
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
6.1 years ago • updated 6.0 years ago
shepherl
4.2k
2
votes
0
replies
2.7k
views
Job:
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics
genomics
transcriptomics
software
Job
6.0 years ago
Laurent Gatto
1.6k
0
votes
1
reply
1.4k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
6.1 years ago
shepherl
4.2k
0
votes
0
replies
1.1k
views
Job:
Software Developer - BC Cancer Research Center, Vancouver BC
software
bioinformatics
sequecing
Job
6.3 years ago
jmaanaki
• 0
0
votes
3
replies
1.5k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
6.3 years ago
shepherl
4.2k
0
votes
1
reply
1.2k
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
6.4 years ago • updated 6.3 years ago
shepherl
4.2k
0
votes
1
reply
1.6k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
6.6 years ago
shepherl
4.2k
0
votes
1
reply
1.5k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
Jamal
• 0
0
votes
1
reply
1.5k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
6.7 years ago
shepherl
4.2k
56 results • Page
1 of 2
Recent ...
Replies
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ReinholdGaylord99
• 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
• 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub
by
shepherl
4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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