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8
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2.1k
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How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation software software error
updated 7.8 years ago by ★ 4.3k • written 7.9 years ago by ▴ 10
1
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8
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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.8k
0
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619
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News: List of Deprecated Packages for Bioc3.19
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8 weeks ago • updated 2 days ago shepherl 3.8k
3
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6
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News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 13 months ago by • 0 • written 14 months ago by 3.8k
0
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5
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News: Final List of Deprecated Packages for Bioc3.14
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2.5 years ago • updated 2.0 years ago shepherl 3.8k
2
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4
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package R software development
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
0
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3
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.9 years ago shepherl 3.8k
1
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3
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Are there any bioconductor github mirrors for data packages?
software bioc-devel developers R
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
2
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3
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2.8k
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package for sex determination using sam/bam files
software sex package
8.6 years ago • updated 8.5 years ago Pau Marc Muñoz Torres ▴ 20
0
votes
3
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1.0k
views
News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 4.0 years ago by ▴ 160 • written 4.1 years ago by 3.8k
0
votes
2
replies
784
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What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 3.7 years ago by 3.8k • written 3.7 years ago by • 0
1
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2
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1.4k
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
3.6 years ago • updated 3.5 years ago shepherl 3.8k
2
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2
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News: Final List of Deprecated Packages for Bioc3.13
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3.4 years ago • updated 3.0 years ago shepherl 3.8k
0
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2
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1.6k
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News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
4.6 years ago • updated 4.4 years ago shepherl 3.8k
2
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2
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News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
4.5 years ago shepherl 3.8k
0
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2
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809
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Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
2
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1
reply
992
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Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq microbiome Software
updated 7 months ago by ★ 4.0k • written 7 months ago by ▴ 10
0
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1
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1.1k
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Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
1
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1
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1.1k
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How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 4.4 years ago by ▴ 10 • written 4.4 years ago by ▴ 40
0
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1
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849
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.3 years ago shepherl 3.8k
0
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1
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1.2k
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News: List of Deprecated Package Bioc 3.9
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5.2 years ago shepherl 3.8k
0
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1
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242
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News: Bioconductor 3.19 Release Schedule
Release release Software
7 weeks ago • updated 4 weeks ago shepherl 3.8k
5
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1
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425
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News: Bioconductor 3.18 is Released!
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written 6 months ago by 3.8k
0
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1
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News: List of Deprecated Packages Bioc 3.10
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4.7 years ago • updated 4.6 years ago shepherl 3.8k
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406
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Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 10 months ago by 65k • written 10 months ago by • 0
0
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861
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News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
5.0 years ago • updated 4.9 years ago shepherl 3.8k
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1
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News: List of Deprecated Package Bioc 3.9
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5.3 years ago shepherl 3.8k
4
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News: Bioconductor 3.12 is Released!
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0
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0
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Job: Harvard Medical School: Jr. Software Engineer/Biomedical Informatician
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0
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0
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1.1k
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News: DEADLINE: All packages to pass R CMD build and R CMD check
release software experimentdata workflows News
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0
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0
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740
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Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
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0
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News: List of Deprecated Packages Bioc 3.10
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Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
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News: Bioconductor 3.10 is released!!
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News: List of Deprecated Packages Bioc 3.11
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News: List of Deprecated Packages Bioc 3.11
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4.2 years ago shepherl 3.8k
4
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0
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News: Bioconductor 3.11 is Released!
software bioconductor release packages News
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0
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News: List of Deprecated Packages for Bioc3.12
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3
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News: List of Deprecated Packages for Bioc3.12
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0
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0
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Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
3.5 years ago Vincent J. Carey, Jr. 6.7k
0
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News: The NIH Software Discovery Index | We invite your comments
software NIH index News
9.6 years ago Sean Davis 21k
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News: Bioconductor 3.17 is Released!
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News: Bioconductor 3.14 is Released!
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2.5 years ago shepherl 3.8k
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
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2.1 years ago shepherl 3.8k
0
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Job: Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data immunology software vaccinology
2.6 years ago Daniel • 0
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News: Bioconductor 3.13 is Released!
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0
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
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18 months ago shepherl 3.8k
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News: Bioconductor 3.15 is Released!
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24 months ago shepherl 3.8k
0
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News: Bioconductor 3.17 Release Schedule
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13 months ago shepherl 3.8k
0
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Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
17 months ago Robert Castelo ★ 3.3k
50 results • Page 1 of 1
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Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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