Showing : xcms • reset
0
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4
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2.8k
views
mzR could not be loaded on XCMS
xcms msdata mzR Rcpp metabolomics
8.4 years ago • updated 8.3 years ago Titan • 0
1
vote
3
replies
2.5k
views
XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
8.3 years ago Titan • 0
0
votes
3
replies
2.1k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
8.3 years ago Titan • 0
0
votes
3
replies
2.4k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms metabolomics
9.0 years ago Johannes Rainer ★ 2.0k
0
votes
2
replies
1.4k
views
get LCMS masses with more significant figures with xcmsRaw()
R xcms xcmsRaw LC
updated 8.8 years ago by ★ 2.0k • written 8.8 years ago by • 0
0
votes
3
replies
3.7k
views
how to import a CDF file in R ?
xcms metaMS MSeasy r
updated 8.6 years ago by • 0 • written 8.6 years ago by ▴ 80
0
votes
4
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2.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
8.3 years ago Titan • 0
0
votes
2
replies
1.3k
views
Error: BiocParallel errors
xcms msdata BiocParallel
8 months ago mavamay • 0
2
votes
4
replies
1.3k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.2 years ago james.dalgleish ▴ 30
0
votes
5
replies
1.9k
views
XCMS for LC-MS
xcms xcms
updated 10.4 years ago by ▴ 20 • written 10.4 years ago by ★ 13k
1
vote
3
replies
1.3k
views
Unable to set colors in plotrt function in xcms package
xcms bug
9.1 years ago Johannes Rainer ★ 2.0k
0
votes
6
replies
2.7k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
8.0 years ago dfrtyu • 0
0
votes
6
replies
2.0k
views
error when loading mzR
xcms mzR xcms mzR
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ★ 13k
0
votes
1
reply
937
views
Too many open files error with groupName = "all" in biocLite() call on Apple OS X
Cancer Breast Biobase AnnBuilder xcms Cancer Breast Biobase AnnBuilder xcms
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ▴ 310
0
votes
1
reply
1.7k
views
installing xcms package for R 64-bit
GO Cancer cdf xcms GO Cancer cdf xcms
updated 14.4 years ago by ▴ 10 • written 14.4 years ago by ▴ 40
0
votes
1
reply
997
views
help
cdf xcms BiocInstaller cdf xcms BiocInstaller
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.7k
views
problems installing xcms package
cdf xcms cdf xcms
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ▴ 360
0
votes
3
replies
2.4k
views
XCMS / mzR / Rcpp dependency issue
xcms xcms
updated 11.9 years ago by 1.6k • written 11.9 years ago by ▴ 30
0
votes
3
replies
3.4k
views
Installation of XCMS / mzR failed
cdf xcms BiocInstaller cdf xcms BiocInstaller
updated 11.8 years ago by 65k • written 11.8 years ago by ▴ 20
0
votes
3
replies
2.5k
views
XCMS query regarding mzXML
xcms xcms
updated 10.8 years ago by 1.6k • written 10.8 years ago by ▴ 570
1
vote
4
replies
2.2k
views
How to get from xcmsRaw to a xcmsSet
xcms metabolomics
updated 9.1 years ago by ▴ 70 • written 9.1 years ago by ★ 2.0k
2
votes
9
replies
2.7k
views
Unexpected total ion count (TIC) with xcms package
xcms metabolomics
updated 9.1 years ago by ▴ 70 • written 9.1 years ago by ★ 2.0k
2
votes
1
reply
2.1k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 6.9 years ago by • 0 • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.6k
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 7.9 years ago by ▴ 20 • written 8.0 years ago by • 0
0
votes
1
reply
1.1k
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by • 0
1
vote
7
replies
2.3k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
1
vote
1
reply
1.2k
views
xcms warning message
R xcms warning message
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.5k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 7.1 years ago by 50k • written 7.1 years ago by • 0
0
votes
2
replies
1.2k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 6.9 years ago by 1.6k • written 6.9 years ago by • 0
5
votes
7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 6.6 years ago by ★ 2.0k • written 6.6 years ago by ▴ 30
1
vote
2
replies
2.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.0 years ago by ★ 2.0k • written 6.0 years ago by • 0
3
votes
1
reply
957
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 5.7 years ago by 1.6k • written 5.7 years ago by • 0
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.1 years ago lmg • 0
2
votes
6
replies
1.6k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 4.8 years ago by ★ 2.0k • written 4.8 years ago by ▴ 10
0
votes
5
replies
1.3k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.7 years ago by 1.6k • written 4.7 years ago by • 0
0
votes
3
replies
1.5k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.0 years ago by ★ 2.0k • written 4.0 years ago by • 0
1
vote
2
replies
1.1k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 3.9 years ago by ▴ 20 • written 3.9 years ago by ▴ 30
3
votes
2
replies
832
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.9 years ago by ★ 2.0k • written 3.9 years ago by ▴ 30
0
votes
4
replies
1.5k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
0
votes
1
reply
1.3k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 3.5 years ago by 1.6k • written 3.5 years ago by • 0
1
vote
4
replies
1.4k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 21 months ago by • 0 • written 3.5 years ago by ▴ 30
0
votes
4
replies
15k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 20 months ago by 65k • written 2.7 years ago by • 0
0
votes
3
replies
1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
0
votes
2
replies
1.4k
views
colMax is not exported from the xcms package
xcms
3.0 years ago Habil Zare ▴ 200
0
votes
1
reply
611
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 15 months ago by • 0 • written 18 months ago by ▴ 10
0
votes
1
reply
470
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 13 months ago by ★ 4.1k • written 13 months ago by • 0
2
votes
1
reply
1.2k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.1 years ago abrsoule ▴ 30
0
votes
1
reply
1.2k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
4.8 years ago garfield320 ▴ 30
0
votes
0
replies
667
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
2.0 years ago mba • 0
50 results • Page 1 of 1
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Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
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A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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