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0
votes
0
replies
638
views
Unclear exon-exon connection after RSubjunc() usage
IGV
Rsubjunc
Rsubread
22 months ago
thomas.heigl.ibk
• 0
0
votes
1
reply
1.9k
views
error in mapIds function
mapIds
biomaRt
updated 22 months ago by
Marcel Ramos
700 • written 22 months ago by
Regina
• 0
1
vote
4
replies
1.6k
views
DEseq2 coefficient
DESeq2
coefficient
22 months ago • updated 20 months ago
JKim
• 0
3
votes
5
replies
1.8k
views
DESEQ Inquiry
DESeq2
rnaseqGene
RNASeqData
limma
RNASeq
updated 22 months ago by
Michael Love
43k • written 22 months ago by
sap275
▴ 10
2
votes
1
reply
769
views
Limma Question
DESeq2
BatchEffect
limma
RNASeq
updated 22 months ago by
Michael Love
43k • written 22 months ago by
sap275
▴ 10
0
votes
1
reply
785
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
sodiogoes
• 0
2
votes
2
replies
856
views
locfunc not found in DESeq2
locfunc
DESeq2
shorth
estimateSizeFactors
22 months ago
Hope
▴ 10
0
votes
6
replies
2.5k
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 22 months ago by
qianyi13
• 0 • written 22 months ago by
Pavel
• 0
0
votes
2
replies
869
views
problem in installing the new version of bioconductor
ANCOMBC
updated 22 months ago by
shepherl
4.2k • written 22 months ago by
Maryam
• 0
1
vote
2
replies
883
views
evaluate the variable importance on genes
DESeq2
deseq
22 months ago
Meme
• 0
0
votes
3
replies
864
views
library sizes differ extremely after dds
DESeq2
updated 22 months ago by
Michael Love
43k • written 22 months ago by
HAK
• 0
1
vote
1
reply
780
views
Filter genes that have >= 1 cpm and are expressed in 80% of the case in the group (case=Yes, control=No)
RBioinf
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
fr8712ca-s
• 0
1
vote
4
replies
1.6k
views
Comparing gene expression across three tissue types to identify any difference.
DESeq2
22 months ago
James Aiden
• 0
3
votes
8
replies
2.5k
views
Downloading package mixOmics
mixOmics
22 months ago
noortje_bloem94
• 0
1
vote
2
replies
971
views
Bioconductor unreachable?
limma
22 months ago
edoardo
• 0
0
votes
13
replies
1.9k
views
Unexpected behavior of lfcShrink() function in DESeq2 analysis
DESeq2
SmallRNA
updated 22 months ago by
Michael Love
43k • written 22 months ago by
r.r.bioinf
• 0
1
vote
1
reply
1.7k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray
methylationArrayAnalysis
ChAMP
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
david.cheishvili
• 0
3
votes
1
reply
1.5k
views
Mapping LOC genes between species using Orthology.eg.db (or a similar tool)
Orthology.eg.db
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
Benji Bromberg
▴ 30
0
votes
0
replies
817
views
Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
22 months ago
Andy Lynch
▴ 120
7
votes
3
replies
1.6k
views
work shops/summer schools
written 21.8 years ago by
Miroslava Cuperlovic-Culf
▴ 50
0
votes
9
replies
2.3k
views
limma fo continous variables
limma
DEGseq
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
mia
• 0
0
votes
0
replies
566
views
Comparing the effects of a condition over time in two seperate tissues
MAST
22 months ago
Dillon
• 0
1
vote
5
replies
1.0k
views
vst transformation and zero counts
DESeq2
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
boczniak767
▴ 740
0
votes
4
replies
2.3k
views
Installation problem of rtracklayer on Bioconductor version 3.19
newpackage
rtracklayer
updated 22 months ago by
shepherl
4.2k • written 22 months ago by
Lucille
• 0
1
vote
12
replies
2.8k
views
How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison
DESeq2
InteractionSet
pvalue
22 months ago
paria.alipour
• 0
0
votes
3
replies
816
views
problems updating package
TrajectoryGeometry
22 months ago
michael.shapiro
• 0
0
votes
3
replies
1.5k
views
utf-8 codec can't decode byte 0xd5
importr
DESeq2
updated 22 months ago by
Michael Love
43k • written 22 months ago by
yuhang
• 0
0
votes
4
replies
2.5k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
rae.alshammari
▴ 20
0
votes
2
replies
863
views
limma model matrix questions
limmaGUI
limma
pairedsamples
22 months ago
whyw6948
• 0
0
votes
1
reply
503
views
Problems with filtering DESeq Results (log2fold change)
DESeq2
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
Aaliya
• 0
3
votes
7
replies
2.0k
views
Average biological replicates in RNA-seq
Mfuzz
RNASeq
22 months ago • updated 3 months ago
boczniak767
▴ 740
0
votes
1
reply
1.6k
views
Invalid UTF-8
GeoMxWorkflows
updated 22 months ago by
Vincent J. Carey, Jr.
6.7k • written 22 months ago by
Shaktiprasad
• 0
0
votes
0
replies
736
views
how to solve this error?
ChAMPdata
ChAMP
22 months ago
Meghana
• 0
0
votes
3
replies
1.2k
views
DESeq2: Adjust for treatment effect patient vs control
DESeq2
updated 22 months ago by
Michael Love
43k • written 22 months ago by
Ead72bbe
• 0
0
votes
1
reply
2.0k
views
Pseudobulk-DESeq2 analyze multiple cell types at once?
pseudobulk
DESeq2
updated 22 months ago by
Michael Love
43k • written 22 months ago by
puffsquash
• 0
0
votes
7
replies
1.3k
views
DESeq filtering specific to contrasts
DESeq2
updated 20 months ago by
Michael Love
43k • written 22 months ago by
Emma
• 0
0
votes
2
replies
872
views
help checking the design matrix and contrast in DESeq2 "not full rank" scenario
DESeq2
22 months ago
ccshao
▴ 70
0
votes
1
reply
686
views
Double batch effect (Individuals nested within blocks in DESeq2)
DESeq2
updated 22 months ago by
Michael Love
43k • written 22 months ago by
Rania Ouaz
• 0
1
vote
3
replies
990
views
frma normalization
frmaTools
affy
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
michelafrancesconi8
• 0
1
vote
1
reply
1.0k
views
FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 21 months ago by
SamGG
▴ 360 • written 22 months ago by
jarod
▴ 30
0
votes
2
replies
1.2k
views
Limma with replicates at different time points
RNAs
limma
Differen
22 months ago
alessandro
• 0
0
votes
1
reply
733
views
Main effect on multiple comparisons in limma
limmaGUI
lim
MultipleComparison
multip
updated 22 months ago by
Gordon Smyth
53k • written 22 months ago by
roger.moreno.justicia
• 0
2
votes
6
replies
1.1k
views
edgeR: DEGs in a CRD factorial (2x2x2)
edgeR
22 months ago
tsl0026
• 0
5
votes
4
replies
1.1k
views
Confusion about LFC using contrasts weights in EdgeR
edgeR
22 months ago
pl23
• 0
6
votes
12
replies
5.5k
views
Packages don't update, but no error or warning is thrown
Bioconductor
updated 12 months ago by
neighsanlo
• 0 • written 23 months ago by
gernophil
• 0
1
vote
2
replies
985
views
DESeq2 issue: can't create DESeq2 object
DESeq2
RBioinf
22 months ago
Magdalena
• 0
0
votes
0
replies
678
views
ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
22 months ago
mat149
▴ 80
2
votes
2
replies
795
views
Error in enrichKEGG for a model organism
enrichKEGG
KEGGgraph
KEGG
updated 22 months ago by
Guido Hooiveld
★ 4.1k • written 22 months ago by
cinzia.spagnoli
• 0
0
votes
0
replies
1.2k
views
GDC slides download
TCGAbiolinks
22 months ago
jain72744
• 0
0
votes
1
reply
464
views
Inconsistency in DESeq2 Log fold change
DESeq2
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
Kuldeep
• 0
46,703 results • Page
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The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures
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Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Comment: Empty boxes in treemap plot rrvgo package
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TikTsokaasocissalpc
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Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
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That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
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TikTsokaasocissalpc
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