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Comment: Differential expression analysis using two TCGA datasets
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ATpoint
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If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Comment: PhD scholar
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Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
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Yes, that is the correct way to use `arrayWeightsQuick`.
Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…
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solved with viewApply (code is simplified below) + map reduce on chrs
test.split <- split(test.gr,seqnames(test.gr))
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Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
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