Bioconductor Forum

70

votes

8

replies

62k

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fdr qvalue

updated 8.6 years ago by Gordon Smyth 52k • written 12.4 years ago by Jack Luo ▴ 440

52

votes

20

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50k

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rnaseq batch effect deseq2 combat removebatcheffect()

updated 8.9 years ago by adam • 0 • written 9.4 years ago by AB ▴ 110

44

votes

29

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13k

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org.Hs.eg.db pathview

updated 4.1 years ago by Kevin Ushey ▴ 130 • written 4.1 years ago by Arun ▴ 160

41

votes

44

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13k

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FDR p-value DESeq RNA-Seq

updated 7.4 years ago by Wade Davis ▴ 60 • written 8.0 years ago by yjiangnan ▴ 10

38

votes

23

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17k

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deseq2

10.7 years ago • updated 7 weeks ago Michael Love 43k

34

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29

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16k

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deseq2 timecourse

updated 8 months ago by Michael Love 43k • written 10.2 years ago by john ▴ 130

34

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11

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43k

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limma

written 11.5 years ago by Jon Bråte ▴ 260

34

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16

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47k

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R TPM

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by cahidora ▴ 100

32

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0

replies

43k

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Microarray limma

20.6 years ago • updated 4.6 years ago Gordon Smyth 52k

32

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16

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20k

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tximport deseq2 TPM RPKM rnaseq

updated 7.0 years ago by luxeredias ▴ 20 • written 8.8 years ago by tangming2005 ▴ 200

30

votes

21

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60k

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deseq2 lowcount

updated 16 months ago by Xiao • 0 • written 10.2 years ago by aristotele_m ▴ 40

28

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25

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6.8k

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Gviz rtracklayer

updated 7.8 years ago by aina.jene ▴ 10 • written 8.2 years ago by Ramiro Magno ▴ 100

28

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7

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13k

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deseq2 rnaseq statistics

updated 19 months ago by camillab. ▴ 10 • written 7.6 years ago by Russ Fraser ▴ 40

28

votes

6

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46k

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deseq2 r

updated 3.1 years ago by Hongwei ▴ 20 • written 8.3 years ago by tombernardryan ▴ 60

28

votes

8

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13k

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limma microarray

updated 7.7 years ago by Gordon Smyth 52k • written 10.1 years ago by Pauly Lin ▴ 160

28

votes

43

replies

9.9k

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findoverlaps granges

updated 9.1 years ago by Martin Morgan 25k • written 9.2 years ago by Jurat Shahidin ▴ 80

27

votes

21

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25k

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tcga cnv gene symbol coordinate

updated 2.5 years ago by James W. MacDonald 68k • written 10.0 years ago by NS ▴ 60

27

votes

17

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9.2k

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deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 4.0 years ago by Michael Love 43k • written 6.9 years ago by emi.sch ▴ 50

27

votes

13

replies

19k

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dada2

updated 2.3 years ago by Yoon Young • 0 • written 4.0 years ago by lh290 ▴ 60

27

votes

22

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22k

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deseq2 deseq chipseq

updated 7.9 years ago by k.vitting.seerup ▴ 120 • written 9.7 years ago by tangming2005 ▴ 200

27

votes

7

replies

16k

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RNAseq deseq2 ercc

updated 8.6 years ago by Simon Anders ★ 3.8k • written 8.6 years ago by mbeckste ▴ 30

25

votes

37

replies

13k

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rnaseq RSEM TCGA edgeR normalization

updated 8.3 years ago by Gordon Smyth 52k • written 8.3 years ago by svlachavas ▴ 840

25

votes

9

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8.0k

views

limma voom proteomics spectral counts massspectrometry

updated 10.3 years ago by Gordon Smyth 52k • written 10.3 years ago by Ben Neely ▴ 40

25

votes

11

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8.7k

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deseq deseq2 edgeR normalization

updated 9.5 years ago by Simon Anders ★ 3.8k • written 9.5 years ago by Nik Tuzov ▴ 90

25

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7

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12k

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limma deseq2 edger rnaseq

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by Jack ▴ 20

24

votes

11

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20k

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limma voom limma voom rna-seq quantile normalization

updated 9.3 years ago by Gordon Smyth 52k • written 9.3 years ago by lassancejm ▴ 50

24

votes

12

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13k

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nanostring limma

updated 10.0 years ago by ker61 ▴ 20 • written 10.0 years ago by mali salmon ▴ 370

23

votes

11

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2.5k

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project

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by Jim Hester ▴ 40

22

votes

8

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5.2k

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limma

updated 7.7 years ago by misterrandyclark • 0 • written 9.8 years ago by chris86 ▴ 420

22

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15

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11k

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biomaRt RNASeqData R

updated 18 months ago by Marie ▴ 10 • written 3.1 years ago by Dina ▴ 50

22

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12

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30k

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deseq2

updated 5.7 years ago by Micheal Stark • 0 • written 8.0 years ago by Michael Love 43k

22

votes

4

replies

12k

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limma statistical inference variance test bioconductor

updated 10.0 years ago by Gordon Smyth 52k • written 10.0 years ago by svlachavas ▴ 840

22

votes

13

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29k

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gener rnaseq

updated 2.1 years ago by Gordon Smyth 52k • written 9.5 years ago by tonja.r ▴ 80

22

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10

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8.0k

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granges chippeakanno

updated 8.2 years ago by davide.porcellato ▴ 10 • written 8.2 years ago by deut13 ▴ 80

21

votes

5

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17k

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limma voom

updated 10.0 years ago by Gordon Smyth 52k • written 11.0 years ago by John Blischak ▴ 190

21

votes

24

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14k

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biomart bug

updated 9.0 years ago by Paul Shannon ▴ 470 • written 9.5 years ago by Johannes Rainer ★ 2.1k

21

votes

1

reply

8.7k

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edgeR

updated 10.6 years ago by Gordon Smyth 52k • written 11.0 years ago by John Brothers II ▴ 90

21

votes

13

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17k

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edger rnaseq

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by candida.vaz ▴ 50

21

votes

34

replies

11k

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Biomart

updated 4.6 years ago by Mike Smith ★ 6.6k • written 4.6 years ago by landenshanie ▴ 40

21

votes

10

replies

9.6k

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mooc Tutorial

updated 7.1 years ago by ifmrdatascience • 0 • written 9.7 years ago by Kasper Daniel Hansen ★ 6.5k

20

votes

15

replies

67k

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deseq deseq2

updated 3.5 years ago by Michael Love 43k • written 10.5 years ago by francesca.defilippis ▴ 100

20

votes

18

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5.8k

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limma batch effect ComBat differential gene expression

updated 9.6 years ago by W. Evan Johnson ▴ 870 • written 9.6 years ago by svlachavas ▴ 840

20

votes

13

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4.1k

views

markdown News

7.8 years ago • updated 7.2 years ago Lucas Schiffer ▴ 240

20

votes

10

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21k

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GenomicRanges

updated 3.3 years ago by jon.klonowski ▴ 40 • written 8.9 years ago by endrebak85 ▴ 40

20

votes

10

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8.4k

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edger estimatedispersions glm

updated 9.2 years ago by Gordon Smyth 52k • written 9.2 years ago by maltethodberg ▴ 180

19

votes

7

replies

14k

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deseq2 ensembl

updated 7.3 years ago by James W. MacDonald 68k • written 7.3 years ago by casey.rimland ▴ 170

19

votes

8

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4.0k

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gdc tcga wes gdc data

updated 7.1 years ago by Sean Davis 21k • written 7.1 years ago by Biologist ▴ 120

19

votes

6

replies

46k

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rnaseq annotationdbi

updated 8.6 years ago by Valerie Obenchain ★ 6.8k • written 8.6 years ago by gokce.ouz ▴ 70

19

votes

6

replies

35k

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edgeR cpm

updated 6.9 years ago by ftroot1010 ▴ 20 • written 7.1 years ago by jxb.dev ▴ 40

19

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10

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4.9k

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limma romer

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by Jon Manning ▴ 40