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13
votes
35
replies
18k
views
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice
david
updated 6.6 years ago by
gevermalc
• 0 • written 9.6 years ago by
Vivek.b
▴ 100
0
votes
17
replies
3.0k
views
Defining Weights in marrayNorm.
Microarray
Microarray
updated 21.5 years ago by
Yuk Fai Leung
▴ 100 • written 21.5 years ago by
Josef Walker
▴ 20
3
votes
18
replies
3.9k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
19 months ago • updated 10 months ago
shepherl
4.1k
0
votes
20
replies
6.1k
views
ttest or fold change
updated 21.2 years ago by
Garrett Frampton
▴ 20 • written 21.2 years ago by
Jason Hipp
▴ 40
2
votes
27
replies
4.8k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
9.4 years ago • updated 9.3 years ago
alexgraehl
▴ 20
0
votes
22
replies
3.6k
views
'x' has "out of limits" views ,Issue with the file size!! Compareequence function is not working
compilation error
filesize
bioconductor
7.5 years ago
susobhanbaidya
• 0
0
votes
18
replies
4.6k
views
Genbank to Unigene IDs
annotate
AnnBuilder
annotate
AnnBuilder
updated 20.8 years ago by
Kane, David
▴ 10 • written 20.8 years ago by
Gordon Smyth
52k
0
votes
13
replies
2.8k
views
two color arrays normalization
limma
limma
updated 16.0 years ago by
Jenny Drnevich
★ 2.0k • written 16.0 years ago by
Giusy Della Gatta
▴ 110
1
vote
24
replies
5.8k
views
GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
7.4 years ago
achaillon
• 0
8
votes
17
replies
16k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 9.4 years ago by
mh.manoj
• 0 • written 10.0 years ago by
brohawndg
▴ 150
1
vote
16
replies
4.4k
views
Error: could not find function "dba"
software error
diffbind
dba
8.3 years ago
mmarins
• 0
11
votes
25
replies
11k
views
readCufflinks problem with extdata
cummerbund
updated 7.4 years ago by
markus.ball
▴ 10 • written 7.6 years ago by
biakemi
▴ 40
0
votes
16
replies
3.0k
views
Finding GO leaf nodes for an ontology - which package?
updated 17.6 years ago by
Seth Falcon
★ 7.4k • written 17.6 years ago by
Tim Smith
★ 1.1k
1
vote
12
replies
3.7k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 10.2 years ago by
drsuuzzz
• 0 • written 10.3 years ago by
alessandro brozzi
▴ 120
0
votes
27
replies
3.3k
views
summarizeOverlaps mode ignoring inter feature overlaps
11.9 years ago
Thomas Girke
★ 1.7k
0
votes
10
replies
2.3k
views
ABPkgBuilder Error;
19.5 years ago
Barry Henderson
▴ 250
0
votes
16
replies
3.1k
views
Affy: Present calls in an eset
updated 21.4 years ago by
Stephen Henderson
★ 1.0k • written 21.4 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
11
replies
1.7k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
11 months ago • updated 3 months ago
shepherl
4.1k
4
votes
21
replies
4.0k
views
RMA normaliztion using XPS
normalization
xps
updated 9.8 years ago by
cstrato
★ 3.9k • written 9.8 years ago by
dhwani.dholakia
• 0
2
votes
12
replies
3.0k
views
I want to order genes in GO groups
gene ontology
genefilter
updated 9.4 years ago by
b.nota
▴ 370 • written 9.4 years ago by
kanacska
▴ 10
3
votes
12
replies
4.3k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 7.5 years ago by
Thomas Carroll
▴ 420 • written 9.9 years ago by
atisou
• 0
2
votes
15
replies
3.6k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.8 years ago
mnaymik
▴ 10
0
votes
12
replies
2.4k
views
KEGGSOAP
KEGGSOAP
KEGGSOAP
updated 18.9 years ago by
Seth Falcon
★ 7.4k • written 18.9 years ago by
Dr.Mayhaus Manuel
▴ 30
6
votes
22
replies
4.6k
views
Oligo package: paCalls questions
microarray
oligo
updated 9.7 years ago by
cstrato
★ 3.9k • written 9.7 years ago by
whyuen
▴ 20
1
vote
13
replies
6.3k
views
ERROR: dependency 'GO.db' is not available for package 'systemPipeR'
software error
8.6 years ago
phpaul2010
• 0
0
votes
10
replies
2.6k
views
how to revert to an older limma version?
17.6 years ago
Maya Bercovich
▴ 50
1
vote
21
replies
4.1k
views
Rsubread stopping half-way through align
rsubread
8.6 years ago • updated 8.5 years ago
Campbell.1933
• 0
4
votes
15
replies
3.6k
views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
9.5 years ago • updated 9.4 years ago
diana.schreier
• 0
0
votes
17
replies
2.5k
views
Coverage by base
Coverage
Coverage
13.4 years ago • updated 13.3 years ago
rohan bareja
▴ 200
0
votes
10
replies
3.3k
views
read.GenePix not opening connection
Microarray
marray
Microarray
marray
updated 19.6 years ago by
Tony Kowal
▴ 20 • written 19.6 years ago by
Amy Mikhail
▴ 460
0
votes
8
replies
1.9k
views
uppercase & lowercase
updated 17.7 years ago by
Saroj Mohapatra
▴ 450 • written 17.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
8
replies
5.1k
views
GSVA: problem with chip annotation
gsva
updated 10.3 years ago by
Robert Castelo
★ 3.4k • written 10.3 years ago by
q017mm
• 0
0
votes
10
replies
2.8k
views
Getting rawdata for TMM normalization
normalization
8.6 years ago
humberto_munoz
• 0
0
votes
12
replies
7.3k
views
ChAMP input: Beta Matrix?
champ
dmr analysis
updated 7 months ago by
tahirah.yasmin2014
• 0 • written 9.0 years ago by
Shicheng Guo
• 0
5
votes
14
replies
5.4k
views
gene symbols in Gviz
Gviz
9.6 years ago
Bogdan
▴ 670
0
votes
10
replies
4.7k
views
GOStat and multiple testing
GO
GOstats
GO
GOstats
updated 20.5 years ago by
A.J. Rossini
▴ 810 • written 20.5 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
13
replies
6.5k
views
gage pathways enrichment analysis
gage
pathways
kegg
updated 10.2 years ago by
Luo Weijun
★ 1.6k • written 10.2 years ago by
francesca.defilippis
▴ 100
0
votes
14
replies
3.0k
views
got 0 significant differential bound (DB)
diffbind
7.7 years ago
mforoo1
• 0
0
votes
11
replies
2.3k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
VariantAnnotation
Annotation
VariantAnnotation
VariantTools
VariantAnnotation
Annotation
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
Thomas Girke
★ 1.7k
7
votes
28
replies
7.3k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 12 months ago by
Gordon Smyth
52k • written 9.9 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
12
replies
3.8k
views
testing GO categories with Fisher's exact test.
GO
Category
GO
Category
updated 21.0 years ago by
James W. MacDonald
68k • written 21.0 years ago by
Nicholas Lewin-Koh
▴ 430
0
votes
9
replies
3.9k
views
rhdf5 32-bit unsigned int issue
rhdf5
bug
updated 9.6 years ago by
Bernd Fischer
▴ 550 • written 9.6 years ago by
wrob311
• 0
0
votes
21
replies
5.8k
views
unable to readImage using EBImage package
EBImage
EBImage
updated 12.9 years ago by
Nurdiyanah Jambari
▴ 90 • written 13.0 years ago by
Guest User
★ 13k
0
votes
10
replies
1.8k
views
Lumi warning and question
17.5 years ago
Ingrid H. G. Østensen
▴ 700
2
votes
30
replies
5.1k
views
ggbio 1.12.0 autoplot() with txdb example is broken
TranscriptDb
TranscriptDb
updated 10.8 years ago by
Tengfei Yin
▴ 490 • written 10.8 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
9
replies
2.3k
views
Pooling in microarray studies
updated 21.4 years ago by
Tan, MinHan
▴ 180 • written 21.4 years ago by
Wiesner Vos
▴ 50
1
vote
9
replies
4.5k
views
Question about ChiPseeker: plot other values in plotAvgProf2
ChiPseeker
updated 9.3 years ago by
Guangchuang Yu
★ 1.2k • written 9.3 years ago by
francesca casalino
▴ 50
0
votes
8
replies
1.9k
views
info su illumina
updated 19.0 years ago by
Lynn Amon
▴ 110 • written 19.0 years ago by
Alberto Goldoni
▴ 360
2
votes
13
replies
3.7k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
8.5 years ago • updated 8.0 years ago
s.munster
▴ 40
0
votes
8
replies
2.0k
views
Problem creating a contrast matrix
updated 17.6 years ago by
James W. MacDonald
68k • written 17.6 years ago by
Siarhei Manakou
▴ 100
46,333 results • Page
1 of 927
Recent ...
Replies
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Votes
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
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