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1.6k
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Job: Postdoc/RA position: Software Engineer For R and High-Performance Computing
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how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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Recount3 data correspond to TCGA data
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Ph.D. scholar
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497
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CUT&Tag differential peak analysis using Diffbind, with pre-calculated normalization factor.
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356
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How to sort negative log2FC or FC in RNAseq for GSEA?
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How can I generate a heatmap and clustering of differentially expressed genes in a RNA-seq data?
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Is there a way to do DEG analysis across two batches sharing one sample only?
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
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770
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contrast matrix design for a continuous variable
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1
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11
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222
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2
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525
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98
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91
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Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
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12 days ago GJ • 0
0
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81
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promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
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0
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0
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46,296 results • Page 1 of 926
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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0
Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
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Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
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