3
votes
18
replies
4.0k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
20 months ago • updated 11 months ago shepherl 4.1k
0
votes
5
replies
1.8k
views
News: European Bioconductor Conference 2023 planning
Europe Conference EuroBioC Events News
updated 11 days ago by • 0 • written 2.4 years ago by ▴ 100
0
votes
11
replies
1.8k
views
News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
12 months ago • updated 4 months ago shepherl 4.1k
0
votes
1
reply
1.6k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 7 months ago by • 0 • written 2.1 years ago by ▴ 100
3
votes
3
replies
1.5k
views
News: Bioconductor 3.20 Release Schedule
software release Release
updated 4 months ago by 52k • written 6 months ago by 4.1k
5
votes
1
reply
1.5k
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 16 months ago by 4.1k
3
votes
3
replies
1.4k
views
News: Extended submission deadline for EuroBioc2020
talk workshop conference eurobioc poster
written 4.4 years ago by ▴ 350
1
vote
2
replies
1.3k
views
News: Nominations for Bioconductor 2022 Awards!
Bioc2022 Awards Bioconductor Recognition
written 3.0 years ago by 4.1k
0
votes
5
replies
1.3k
views
News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 11 weeks ago by • 0 • written 13 months ago by ▴ 100
0
votes
3
replies
1.3k
views
News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 23 months ago by ▴ 100
0
votes
1
reply
1.2k
views
News: Bioconductor 3.19 Release Schedule
Release release Software
12 months ago • updated 11 months ago shepherl 4.1k
1
vote
1
reply
1.1k
views
News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia BioCAsia Conferences Events BioC
written 2.4 years ago by ▴ 750
3
votes
1
reply
1.1k
views
News: [Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv spatialLIBD News
written 5.0 years ago by ★ 1.1k
4
votes
0
replies
1.0k
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
10 months ago shepherl 4.1k
0
votes
3
replies
977
views
News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
updated 10 days ago by • 0 • written 2.0 years ago by ▴ 100
0
votes
1
reply
958
views
News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
written 6 months ago by ▴ 100
0
votes
2
replies
819
views
News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
written 13 months ago by ▴ 100
1
vote
0
replies
717
views
News: Bioconductor 3.20 is Released!
Bioconductor Release Software
4 months ago shepherl 4.1k
1
vote
0
replies
707
views
News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
11 months ago • updated 10 months ago shepherl 4.1k
2
votes
0
replies
627
views
News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
6 months ago Maria Doyle ▴ 100
1
vote
0
replies
609
views
News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
7 months ago shepherl 4.1k
1
vote
0
replies
609
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
10 months ago Aleena ▴ 30
0
votes
0
replies
591
views
News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
11 months ago shepherl 4.1k
0
votes
1
reply
565
views
News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 5 months ago by • 0 • written 5 months ago by ▴ 10
0
votes
1
reply
542
views
News: Join BOC Sciences at Drug Discovery Chemistry 2024
DFP
written 12 months ago by • 0
0
votes
1
reply
527
views
News: Stop mirror service
metaMSdata
updated 9 months ago by 4.1k • written 9 months ago by • 0
0
votes
0
replies
511
views
News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
11 months ago Maria Doyle ▴ 100
0
votes
1
reply
485
views
News: Services
flowBeads
written 11 months ago by • 0
0
votes
1
reply
477
views
News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
6 months ago Maria Doyle ▴ 100
0
votes
0
replies
462
views
News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
9 months ago Maria Doyle ▴ 100
0
votes
0
replies
430
views
News: Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
carpentry conference
11 months ago Wolfgang Huber ★ 13k
0
votes
0
replies
429
views
News: TIDES USA 2024
flowBeads
11 months ago bocsci11 • 0
0
votes
0
replies
418
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
9 months ago info ▴ 10
0
votes
0
replies
413
views
News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
10 months ago Maria Doyle ▴ 100
0
votes
0
replies
406
views
News: Interested in the analysis of Spatial Omics data?
tidySpatialExperiment SpatialExperiment MoleculeExperiment
10 months ago info ▴ 10
0
votes
0
replies
401
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
4 months ago Ensembl_Jorge • 0
0
votes
1
reply
393
views
News: Bioconductor Build System
Builds Bioconductor
written 9 months ago by 4.1k
0
votes
0
replies
389
views
News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
7 months ago Maria Doyle ▴ 100
0
votes
0
replies
382
views
News: Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing Sequencing SequencingData
11 months ago communication • 0
0
votes
0
replies
375
views
News: AnnotationHub and ExperimentHub Access Downtime
AnnotationHub ExperimentHub
9 months ago shepherl 4.1k
0
votes
0
replies
371
views
News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
8 months ago Maria Doyle ▴ 100
0
votes
0
replies
363
views
News: Legacy Bioconductor Installation
Installation Bioconductor
9 months ago shepherl 4.1k
0
votes
0
replies
363
views
News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
8 months ago Maria Doyle ▴ 100
0
votes
0
replies
361
views
News: Metabolomics with R/Bioconductor Online Course
metabomxtr MetaboCoreUtils metabolomicsWorkbenchR Metabolomics
6 months ago info ▴ 10
0
votes
0
replies
322
views
News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
7 months ago shepherl 4.1k
0
votes
0
replies
309
views
News: RNAseq data analysis with Bioconductor (online course)
DESeq2 SummarizedExperiment
5 months ago • updated 4 months ago info ▴ 10
0
votes
0
replies
282
views
News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
5 months ago Maria Doyle ▴ 100
0
votes
0
replies
274
views
News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
4 months ago shepherl 4.1k
0
votes
0
replies
268
views
News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
4 months ago Maria Doyle ▴ 100
0
votes
0
replies
242
views
News: Single-cell RNA-seq analysis with R/Bioconductor (online course)
SingleCellExperiment SingleCell
5 months ago info ▴ 10
64 results • Page 1 of 2
Recent ...
Replies
Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question? by DavideSant • 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data by silickas • 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Awards • All
Popular Question to igor ▴ 50
Popular Question to xiaofeiwang198266 • 0
Scholar to shepherl 4.1k
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 52k
Locations • All
Japan, 21 minutes ago
The city by the bay, 22 minutes ago
Poland, 53 minutes ago
Iran, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Traffic: 559 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6