0
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0
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356
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Y-axis break ihn Volcano Plot
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8 months ago rajdeepboral00 • 0
0
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0
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323
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getQC(RGset.raw) from IlluminaHumanMethylationMSAmanifest
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updated 8 months ago by 4.3k • written 8 months ago by • 0
0
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1
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374
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DiffBind plot.profile error
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written 9 months ago by • 0
0
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1
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729
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Using EBI Image on Ranged Bar Chart
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3
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Possible issue following the logNormCounts(filtered) with resulted fit
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9 months ago Konstantinos Yeles ▴ 90
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2
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679
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GBCC2025: New Scholarship Opportunities Available!
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updated 6 months ago by • 0 • written 9 months ago by ▴ 110
0
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0
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359
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Blank gene_id in featureCounts
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9 months ago Meg • 0
0
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1
reply
621
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FCS 32 support going backwards?
flowCore
updated 9 months ago by • 0 • written 9 months ago by • 0
0
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0
replies
437
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What Input-type do I use in decouplR::run_viper?
decoupleR viper
updated 9 months ago by 43k • written 9 months ago by • 0
0
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0
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422
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Combining COMBAT-seq result (raw count) with other raw count
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9 months ago dudwnsrla1 • 0
0
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1
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668
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Can't install BioC packages (and manager) behind firewall
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updated 9 months ago by 700 • written 9 months ago by • 0
0
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0
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Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
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9 months ago Muhammad • 0
0
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1
reply
912
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Combat-seq usage
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9 months ago bbao ▴ 10
0
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1
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479
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What happened to the Joost2016 dataset
org.Sc.sgd.db
updated 9 months ago by 4.3k • written 9 months ago by • 0
0
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2
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925
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FlowSOM is unable to create Output
FlowSOM
updated 9 months ago by • 0 • written 9 months ago by • 0
0
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6
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1.9k
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Discrepancies in normalised count data vs unnormalised
DESeq2
10 months ago • updated 9 months ago AMgroup • 0
0
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0
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543
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Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma probe DMRcate GenomicRanges DifferentialMethylation
10 months ago jamiecatalano2 • 0
0
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0
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524
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Batch correction for microarray
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10 months ago Shaimaa Gamal • 0
0
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0
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265
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GRaNIE with no internet
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10 months ago maia.malonzo • 0
0
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0
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305
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
10 months ago Javier • 0
0
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0
replies
457
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I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap mergingpeaks ChIPseq DiffBind
10 months ago atlanta • 0
1
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1
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1.5k
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Differential expression analysis using two TCGA datasets
DifferentialExpression TCGAbiolinks RNASeq
updated 10 months ago by ★ 5.0k • written 10 months ago by • 0
1
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0
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591
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Modelling gene program dynamics across time with {lemur}
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10 months ago BiotechPedro ▴ 10
0
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1
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711
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Intepretation of results
AUCell
written 10 months ago by • 0
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4
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2.5k
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DiffBind can't find a DAR
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10 months ago Mengjun • 0
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3
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DESeq - help with pair wise comparisons
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10 months ago bd2000 ▴ 30
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11 months ago Shoqz 0
0
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0
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11 months ago irenejoshi07 0
0
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4
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Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
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11 months ago Sofia • 0
1
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1
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1.1k
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ComBat with repeated measures
ComBat sva
updated 11 months ago by ★ 5.0k • written 11 months ago by • 0
0
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0
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Correlation threshold
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11 months ago user_bioinfo • 0
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5
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Bioconductor unable to update 'curl'
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11 months ago kagodwi2 • 0
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547
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GAGE kegg.gsets() self-signed certificate error
gageData gage
11 months ago Lucas • 0
0
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0
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DiffBind multi-tissue comparison
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11 months ago lryrainche • 0
0
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0
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814
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fgsea: ranking genes using log2FC and pvalues derived from spline model
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11 months ago GT • 0
0
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1
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534
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Discrepancy between Excel TPP-TR reported values and the Melt Curve reported values
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updated 11 months ago by 68k • written 11 months ago by • 0
0
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1
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489
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Transcript ID Mismatch in riboWaltz Annotation Table
RiboProfiling RiboSeq
updated 11 months ago by 4.3k • written 11 months ago by • 0
0
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0
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Simple confidence intervall Gviz
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11 months ago William • 0
0
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2
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Removing UTR from GTF for gene quantification
edgeR DESeq2
updated 11 months ago by 43k • written 11 months ago by ▴ 20
0
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0
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DiffBind recommendation on using IgG bams
peakcalling DiffBind
12 months ago Harish • 0
0
votes
1
reply
454
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DepMap data mismatch
depmap
updated 12 months ago by 1.6k • written 12 months ago by ▴ 30
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2
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638
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graper 1.22 Build is Broken
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updated 12 months ago by 4.3k • written 12 months ago by • 0
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1
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747
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Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
12 months ago Adam • 0
0
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0
replies
17
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Spam: <iframe onload=alert(document.domain)>
ncdfFlow MethylSeekR cadd.v1.6.hg38 org.Sc.sgd.db MafDb.1Kgenomes.phase1.GRCh38
12 months ago <iframe onload=alert(document.domain)> 0
0
votes
1
reply
455
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Problem using locateVariants() from the VariantAnnotation package
VariantAnnotation vari
12 months ago Marco • 0
0
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0
replies
343
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SpliceWiz crashes when I apply filters, need splicing analysis help
alternativeSplicingEvents.hg38 AlternativeSplicing SpliceWiz
12 months ago rachel.a.shoemaker • 0
0
votes
0
replies
323
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Error in convertMSImagingArrays2Experiment / estimateDomain in Cardinal
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12 months ago Mark Dunning ★ 1.1k
0
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1
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674
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Does anyone have the command to download all of the core_nt using blast_db_get()
rBLAST BiocFileCache
updated 12 months ago by 4.3k • written 12 months ago by ▴ 390
1
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2
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1.9k
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Error in retrieving clinical data
TCGAbiolinks
12 months ago • updated 11 months ago silickas • 0
1
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0
replies
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Suggesting changing the "reply-to" field to the mailing list address.
updated 12 months ago by 4.3k • written 16.6 years ago by ▴ 950
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
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Thanks both for this useful information.
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SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
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