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0
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271
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DiffBind multi-tissue comparison
DiffBind
9 months ago lryrainche • 0
0
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0
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534
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fgsea: ranking genes using log2FC and pvalues derived from spline model
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10 months ago GT • 0
0
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1
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501
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Discrepancy between Excel TPP-TR reported values and the Melt Curve reported values
TPP
updated 10 months ago by 68k • written 10 months ago by • 0
0
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1
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464
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Transcript ID Mismatch in riboWaltz Annotation Table
RiboProfiling RiboSeq
updated 10 months ago by 4.3k • written 10 months ago by • 0
0
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311
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Simple confidence intervall Gviz
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10 months ago William • 0
0
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2
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809
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Removing UTR from GTF for gene quantification
edgeR DESeq2
updated 9 months ago by 43k • written 10 months ago by ▴ 20
0
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0
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394
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DiffBind recommendation on using IgG bams
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10 months ago Harish • 0
0
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1
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404
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DepMap data mismatch
depmap
updated 10 months ago by 1.6k • written 10 months ago by ▴ 30
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2
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574
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graper 1.22 Build is Broken
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updated 10 months ago by 4.3k • written 10 months ago by • 0
0
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1
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600
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Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
10 months ago Adam • 0
0
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0
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17
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Spam: <iframe onload=alert(document.domain)>
ncdfFlow MethylSeekR cadd.v1.6.hg38 org.Sc.sgd.db MafDb.1Kgenomes.phase1.GRCh38
10 months ago <iframe onload=alert(document.domain)> 0
0
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1
reply
420
views
Problem using locateVariants() from the VariantAnnotation package
VariantAnnotation vari
10 months ago Marco • 0
0
votes
0
replies
312
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SpliceWiz crashes when I apply filters, need splicing analysis help
alternativeSplicingEvents.hg38 AlternativeSplicing SpliceWiz
10 months ago rachel.a.shoemaker • 0
0
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0
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277
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Error in convertMSImagingArrays2Experiment / estimateDomain in Cardinal
Mass Cardinal
10 months ago Mark Dunning ★ 1.1k
0
votes
1
reply
625
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Does anyone have the command to download all of the core_nt using blast_db_get()
rBLAST BiocFileCache
updated 10 months ago by 4.3k • written 10 months ago by ▴ 390
1
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2
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1.7k
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Error in retrieving clinical data
TCGAbiolinks
10 months ago silickas • 0
1
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0
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1.8k
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Suggesting changing the "reply-to" field to the mailing list address.
updated 10 months ago by 4.3k • written 16.4 years ago by ▴ 950
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0
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430
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Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
10 months ago Muhammad • 0
0
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0
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243
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Unable to restore chromosome sequence lengths or other metadata in BSgenome.Mfascicularis.NCBI.6.0
BSgenome.Mfascicularis.NCBI.6.0
11 months ago Genevieve • 0
0
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0
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213
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Generating Biphasic Curves in Offline GR Metrics Package
GRmetrics
11 months ago Jasmitha • 0
3
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5
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Overcoming confounding in batch effect correction
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11 months ago bbao ▴ 10
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5
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 10 months ago by 4.3k • written 11 months ago by • 0
0
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0
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243
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Help with MetagenomeSeq, understanding the 75th quantile
metagenomeSeq cumulativesumscaling
updated 11 months ago by 68k • written 11 months ago by • 0
0
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0
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371
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
11 months ago charlie.wright • 0
0
votes
4
replies
741
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Web accessibility of Bioconductor.org
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updated 11 months ago by 21k • written 11 months ago by • 0
0
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0
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Batch Correction while implementing QSEA package
qsea MEDIPS MEDIPSData DNAMethylation
11 months ago User3088 • 0
0
votes
1
reply
483
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building samplesheet and plot profile
DiffBind
11 months ago yf • 0
0
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0
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218
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DBT JRF & PhD Scholar
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11 months ago Manisha • 0
0
votes
0
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383
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My DEXSeqDataSetFromSE is returning an Error, but all of my checks to seem to indicate that this error is not present
DifferentialSplicing RNASeqData DEXSeq
11 months ago cftattersfield • 0
0
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2
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1.0k
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How to visualize these pathways using pathview
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11 months ago ingrid.h • 0
0
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0
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273
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Problem with PCAtool as dependencie
COTAN PCAtools
11 months ago Silvia • 0
0
votes
0
replies
330
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cnvEQTL : Error in cpm.default(y, lib.size = lib.size) : NA counts not allowed
CNVRanger
11 months ago xiaofeiwang18266 ▴ 60
0
votes
0
replies
339
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gsameth GSA: probe annotation to multiple genes
missMethyl gsameth
12 months ago nurkenber • 0
0
votes
0
replies
405
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Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
limma variancePartition
12 months ago GJ • 0
0
votes
2
replies
704
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Paired analysis in proteomics data for DE while interested in only a particular subset of the data
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written 12 months ago by ▴ 840
0
votes
2
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971
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Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER taxonomyassignment phyloseq dada2 Pr2V5
updated 9 months ago by • 0 • written 12 months ago by • 0
0
votes
0
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391
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Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
12 months ago vpochic • 0
0
votes
1
reply
697
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ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 12 months ago by • 0 • written 12 months ago by • 0
0
votes
1
reply
328
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Errors running learn.bn function from Pigengene in windows environment
Pigengene
written 13 months ago by • 0
0
votes
0
replies
10
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Spam: Best Hotels In Maui
prebs
13 months ago 2zrcj3448p 0
0
votes
7
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1.4k
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DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMean, L2FC, ...
DESeq2
updated 13 months ago by • 0 • written 13 months ago by • 0
0
votes
0
replies
304
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Confidence interval contains 0 but p<0.05
MAST
13 months ago Adelyn • 0
0
votes
0
replies
480
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Pathway abundance data from Curatedmetagenomics
curatedMetagenomicData ExperimentHubData
13 months ago Edward • 0
1
vote
4
replies
984
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pathview - multiple states
pathview Pathways KEGG
13 months ago Philippine • 0
0
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5
replies
787
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fail to use addPerROIQC in Rmd
stand standR
updated 13 months ago by • 0 • written 13 months ago by • 0
4
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8
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2.0k
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how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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13 months ago • updated 10 months ago xiaofeiwang198266 • 0
0
votes
1
reply
559
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rrvgo::calculateSimMatrix() error
rrvgo
updated 13 months ago by • 0 • written 13 months ago by • 0
0
votes
0
replies
399
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
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13 months ago David R ▴ 90
0
votes
1
reply
771
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WGCNA with TPM tables
RNASeq WGCNA ComparativeGenomics
updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
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1
reply
461
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eRNAs count
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updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
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Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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