Bioconductor BSgenome

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248

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BSgenome BSgenomeForge

updated 9 days ago by James W. MacDonald 68k • written 12 days ago by mat149 ▴ 80

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838

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BSgenome BSgenome.Hsapiens.UCSC.hg38 Offline

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by firestar ▴ 20

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8.8k

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AnnotationData CrispRdesignR BSgenome

updated 9 months ago by ControlF5 • 0 • written 3.1 years ago by Manoj Kumar R • 0

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1.6k

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BSgenome

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by Kate • 0

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1.3k

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OrgDb BSgenome

23 months ago • updated 19 months ago mat149 ▴ 80

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1.3k

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SNPlocs BSgenome

written 23 months ago by Stevie Pederson • 0

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1.3k

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 2.3 years ago by ATpoint ★ 4.9k • written 2.3 years ago by Lillian • 0

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2.8k

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BSgenomeForge BSgenome

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by kyliecode • 0

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bsgenome GenomicFeatures package

updated 2.3 years ago by Hervé Pagès 16k • written 2.3 years ago by Manish • 0

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844

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bsgenome

updated 2.8 years ago by shepherl 4.2k • written 2.8 years ago by Luigi ▴ 10

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ORFik Bioconductor GenomicRanges Biostrings BSgenome

3.0 years ago Mog • 0

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 3.0 years ago by James W. MacDonald 68k • written 3.0 years ago by rtt100 • 0

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BSgenome

updated 20 months ago by eviatar.weizman • 0 • written 3.4 years ago by remerandmaxence ▴ 10

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BSgenome

updated 3.4 years ago by Hervé Pagès 16k • written 3.4 years ago by liangdan312 • 0

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BSgenome dbSNP T2T-CHM13v2.0 SNPlocs

3.4 years ago Hervé Pagès 16k

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1.4k

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BSgenome Celegans

updated 3.5 years ago by Hervé Pagès 16k • written 3.5 years ago by Tsung-Han • 0

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GenomicRanges BSGenome

3.5 years ago Charles Plessy ▴ 180

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2.0k

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BSgenome seqinfo

3.5 years ago alain.corvisier • 0

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1.3k

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BSgenome

updated 3.7 years ago by Hervé Pagès 16k • written 3.7 years ago by Charles Plessy ▴ 180

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1.8k

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BSgenome

4.9 years ago • updated 3.7 years ago deisianyufg • 0

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1.4k

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BSGenome Forge

3.9 years ago geo.vogler ▴ 10

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1.3k

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BSGenome

updated 4.4 years ago by Hervé Pagès 16k • written 4.4 years ago by Imad • 0

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2.2k

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BSgenome

updated 4.4 years ago by Hervé Pagès 16k • written 4.4 years ago by aybuge.altay • 0

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1.8k

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BSgenome

updated 4.4 years ago by Hervé Pagès 16k • written 4.4 years ago by Chris Seidel ▴ 80

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964

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BSgenome SNPlocs

4.5 years ago Guandong Shang ▴ 40

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2.3k

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BSGenomeForge BSGenome

updated 4.5 years ago by Hervé Pagès 16k • written 4.5 years ago by sieminsk • 0

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2.9k

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BSgenome

updated 4.7 years ago by anamaria ▴ 10 • written 4.8 years ago by sophie.harrington • 0

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3.2k

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BSgenome microtus forging

updated 4.8 years ago by Hervé Pagès 16k • written 4.8 years ago by A.J. ▴ 20

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seedfiles BSgenome

4.9 years ago n.mary • 0

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GenomicRanges GenomeInfoDb BSgenome isCircular

updated 4.9 years ago by Hervé Pagès 16k • written 5.0 years ago by Chris Seidel ▴ 80

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2.0k

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software error BSgenome

5.1 years ago • updated 4.9 years ago jiazhou0116 • 0

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1.4k

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software error BSgenome

updated 5.0 years ago by Hervé Pagès 16k • written 5.1 years ago by jiazhou0116 • 0

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870

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BSgenome msgbsR

5.0 years ago jiazhou0116 • 0

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1.9k

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repetitive elements IRanges GenomicRanges BSgenome

updated 5.1 years ago by James W. MacDonald 68k • written 5.1 years ago by vinod.acear ▴ 50

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1.3k

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BSgenome

updated 5.4 years ago by shepherl 4.2k • written 5.4 years ago by Didi ▴ 10

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bsgenome MutationalPatterns

5.5 years ago • updated 5.4 years ago sibyl.bertrand • 0

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1.4k

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Biostrings vmatchPattern BSgenome

5.5 years ago mb2subi • 0

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1.7k

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annotation mmul10 BSgenome

updated 5.8 years ago by Hervé Pagès 16k • written 5.8 years ago by P Darakjian ▴ 40

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1.1k

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BSgenome News

5.8 years ago Hervé Pagès 16k

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856

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BSgenome

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by Aditya ▴ 160

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2.9k

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bsgenome ggbio

updated 5.9 years ago by serfraz.saad • 0 • written 10.9 years ago by pterry • 0

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2.9k

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BSGenome

updated 5.9 years ago by James W. MacDonald 68k • written 6.0 years ago by zen • 0

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1.9k

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BSgenome methods GenomicRanges

6.1 years ago • updated 6.0 years ago Aditya ▴ 160

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1.9k

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BSgenome BSgenome.Mmusculus.UCSC.mm10::Mmusculus Biostrings

updated 6.1 years ago by shepherl 4.2k • written 6.1 years ago by Aditya ▴ 160

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1.4k

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BSgenome GenomicRanges

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by Aditya ▴ 160

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1.4k

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BSgenome Bsgenome.Mmusculus.UCSC.mm10

6.1 years ago Aditya ▴ 160

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3.4k

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BSgenome BSgenome.Mmusculus.UCSC.mm10

updated 6.1 years ago by shepherl 4.2k • written 6.1 years ago by Aditya ▴ 160

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1.6k

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matchProbePair BSgenome Biostrings BSgenome.Hsapiens.UCSC.hg19

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by svetlana.gorokhova • 0

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1.2k

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bsgenome forgebsgenome getSeqSrcpaths

6.5 years ago tguerreroa90 • 0

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1.3k

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TxDb GRanges BSGenome variant annotation

updated 6.5 years ago by James W. MacDonald 68k • written 6.5 years ago by jacorvar ▴ 40

349 results • Page 1 of 7

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Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Answer: EuroBioC2023 abstract submission is open! by efuite222 • 0

Abstract submissions are now open for the #EuroBioC2023 conference in Ghent, Belgium, from September 20-22; submit by April 14 for opportu…

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …