Showing : DESEQ2 • reset
1
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DESeq2 Dose not work
deseq2
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
3
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5
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10k
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How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 6.8 years ago by ★ 1.4k • written 6.8 years ago by • 0
0
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4
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2.7k
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DESeq2 lfcShrink with interactions
deseq2 lfcShrink interactions
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
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2
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1.0k
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Remove any rows with 0 count in S4
S4 deseq2
updated 6.8 years ago by ★ 1.4k • written 6.8 years ago by • 0
3
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1
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1.4k
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Common differentially expressed genes between two cell lines
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
2
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6
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3.8k
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DESeq2 lfcShrink using only dds and res arguments
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 90
1
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1
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430
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DESeq2 - time series experiment with two treatments and a time zero control
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
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1
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1.3k
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DESeqFromMatrix for 3'end data via tximport; non-integer values
deseq2 tximport
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 20
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4
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2.4k
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tximport: Error in medianLengthOverIsoform
tximport deseq2 dexseq
6.8 years ago d-joester ▴ 20
1
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7
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1.2k
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Deviance returned by DESeq2
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by ★ 3.0k
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1
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532
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DESeqDataSet (dds) assay and sample names
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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4
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2.1k
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Handling missing data, DESeq2
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
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2
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1.2k
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DESeq2 design with different cell lines and disease status
deseq2 design
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
2
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1
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781
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Error in nbinomLRT while trying to follow time course analysis
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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4
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733
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normalized read numbers (RNAseq)
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
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1
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7.8k
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How important is lfcSE?
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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4
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1.7k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 30
0
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5
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3.2k
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Dispersion calculation by DESeq2
DESeq2 dispersion
6.8 years ago eva-m.petit • 0
2
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3
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1.3k
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Batch correction for a sets of genes
cancer deseq2 r rnaseq
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 30
3
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6
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1.5k
views
Unable to find an inherited method for function 'results' for signature '"DESeqDataSet"'
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
2
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3
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2.3k
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Batch-effect: batch in design and corrected batch with sva- DESeq2
deseq2 svaseq
6.8 years ago bioinfo • 0
2
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3
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1.5k
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How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 40
0
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2
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1.5k
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Phyloseq to DESeq2
deseq2 phyloseq
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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3
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1.0k
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DESeq2: Including known contaminant in the design model does not change PCA plot
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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4
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2.0k
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DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2 dispersion
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
5
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10
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5.4k
views
what should I do with many zero counts from Salmon quantification
Salmon DESeq2 normalization r
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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4
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3.6k
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how to handle missing data for SampleTable in DESeq2
deseq2 sample_table missing data
updated 6.8 years ago by • 0 • written 10.7 years ago by ▴ 70
1
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1
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510
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Building the correct model for DESeq2
deseq2
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
3
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7
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1.8k
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Different results with DESeq2 and EdgeR
desEQ2 edger
6.8 years ago AZ ▴ 30
0
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3
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1.3k
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Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects
6.8 years ago tcalvo ▴ 100
0
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7
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1.9k
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Results table completely wrong for specified contrast of
DESeq2 logfoldchange counts
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 60
2
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6
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1.5k
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Deseq2: How to compine reseult of different pairwise comparisons
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
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1
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931
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different observation of DEG for same group
deseq2 DE
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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4
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1.3k
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DESeq2 LRT test behaving strangely?
deseq2
6.8 years ago casikecola • 0
0
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1
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3.1k
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DESeq2 Formula Design - biological & technical replicates - 3 groups
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
3
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5
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1.6k
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Can I use DESeq2 for special assays
Targetedsequencing DESeq2
6.8 years ago • updated 4.8 years ago AZ ▴ 30
2
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1
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766
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DeSeq2 Design for multiple cell lines, medias, vectors
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
2
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11
replies
5.8k
views
Deseq2 Multiple condition issue
deseq2
updated 2.7 years ago by 43k • written 6.8 years ago by ▴ 10
1
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2
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912
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Request to create an organism package
annotation deseq2
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
1
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7
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2.9k
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U-shape of p-value histograms is removed by filtering for genes that have >5 counts in >10% of samples before applying DESeq2 analysis
deseq2 p-value distribution U-shaped pre-filter low counts
6.9 years ago • updated 6.8 years ago stu111538 • 0
3
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7
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1.8k
views
Using varianceStabilizingTransformation (VST) with no replications?
deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 10
1
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1
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1.6k
views
DESeq2 - lfcShrink with list contrast on grouped variable
deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
2
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2
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1.6k
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What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2 PCAplot Visualization
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
0
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7
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1.8k
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DeSeq2 Ribosome Profiling: multiple factor design
deseq2 design timeseries
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 20
3
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6
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1.5k
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Handling multiple knockout experiments with DESeq2
deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
1
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4
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2.5k
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Error : Salmon tximport to DESeq2
deseq2 tximport
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
0
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1
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1.9k
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DESeq2 standard error estimate (lfcSE)
deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
1
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5
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3.7k
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tximport error with kallisto .h5 files
deseq2 kallisto tximport
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
1
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3
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2.1k
views
Using Salmon and DESeq2 to compare metagenomic content between samples
salmon deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
3
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4
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6.0k
views
DESeq2 Formula Design with two variables and individual normalization
deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
4,839 results • Page 55 of 97
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