Showing : DESEQ2 • reset
3
votes
12
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2.4k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2 p-value continuous deseq
6.8 years ago ariel ▴ 20
0
votes
1
reply
999
views
Local versus parametric fitType in DESeq2 in this instance?
deseq2 rna-seq
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
6
replies
2.6k
views
[deseq2] normalization between samples after merging transcripts into genes
deseq2 tximport
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
5
replies
2.1k
views
Hill shape p-value histogram after differential miRNA expression analysis with DESeq2
deseq2 mirna fdrtool
updated 6.8 years ago by ★ 3.4k • written 6.8 years ago by • 0
5
votes
6
replies
2.2k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2 pathway ihw
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 20
0
votes
1
reply
1.4k
views
Deseq2 padjusted values versus pvalue
deseq2 RNASeq padjusted
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 30
3
votes
3
replies
1.2k
views
clarification of time-series analysis
deseq2 baseline LRT
updated 6.8 years ago by 43k • written 6.8 years ago by ★ 1.5k
2
votes
10
replies
4.0k
views
Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 6.8 years ago by 43k • written 6.8 years ago by ★ 1.5k
2
votes
3
replies
4.4k
views
Differences in contrast results while using DESeq2 for one vs all rest combined conditions
deseq2 rna-seq differential expression analysis
6.8 years ago shreygandhi1990 ▴ 10
1
vote
3
replies
2.9k
views
Using RUVSeq RUVs() to perform batch correction using technical replicates
RUVSeq ruvseq RUVs DESEq2 deseq2
updated 6.8 years ago by 53k • written 6.8 years ago by ▴ 680
0
votes
6
replies
1.4k
views
DESeq2:varianceStabilizingTransformation suggested. Results suspicious
deseq2
6.8 years ago jovel_juan ▴ 30
1
vote
2
replies
1.8k
views
DESeq2: RNA-Seq time series analysis after removal of batch effect
deseq2 time series remove batch effect
6.8 years ago Nicola • 0
4
votes
4
replies
3.1k
views
RNA-seq batch correction using technical replicates profiled across batches
deseq2 ruvseq sva edger limma
updated 6.8 years ago by 53k • written 6.8 years ago by ▴ 680
2
votes
1
reply
1.2k
views
tximport: question concerning 'bias corrected counts without an offset' method
tximport deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
8
votes
4
replies
3.3k
views
edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
hemoglobin edgeR deseq2 normalization rnaseq
updated 6.8 years ago by ★ 7.9k • written 6.8 years ago by ▴ 90
0
votes
1
reply
1000
views
Data filtering in DESeq2
deseq2 data filtering
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
5
replies
865
views
DESeq2 overestimates log2Fold Change
deseq2
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
0
votes
1
reply
1.1k
views
differentail expression analysis with interaction terms
edger deseq2 interaction design matrix
updated 6.8 years ago by 68k • written 6.8 years ago by ★ 1.5k
0
votes
4
replies
2.2k
views
Summary results interpretation in DeSeq2
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
8
votes
2
replies
1.4k
views
Does IHW use the supplied alpha for the correction calculations?
IHW deseq2
updated 6.8 years ago by ▴ 180 • written 6.8 years ago by ▴ 120
0
votes
6
replies
1.9k
views
DESeq2: paired samples + controls
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 20
6
votes
7
replies
2.4k
views
DESeq2: 5 Conditions (B vs C) vs (D vs B)
deseq2 contrast ratio of ratio
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 30
1
vote
1
reply
1.5k
views
design for DEseq2: LRT vs Wald & interactions
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 10
1
vote
3
replies
1.6k
views
Appropriate design formula for DESeq2 from principles
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
2
replies
6.8k
views
[Resolved] RcppArmadillo pckg ERRORS : non-zero exit status (and so DESeq2 also)
DESEq2 R linux RcppArmadillo
6.8 years ago RS1 • 0
0
votes
1
reply
3.9k
views
basemean cut off in DESEQ2
deseq2
6.8 years ago angajalaanusha ▴ 10
0
votes
6
replies
2.1k
views
stringasfactor = F changes the output of pheatmap, why?
deseq2 pheatmap
updated 6.8 years ago by ★ 13k • written 6.8 years ago by ▴ 10
2
votes
3
replies
923
views
Recommendations for normalisation post-deseq2
deseq2 normalization posthoc
6.8 years ago marc.osullivan • 0
1
vote
1
reply
1.1k
views
Normalized counts from DESeq2 results in similar but not equal total read count?
deseq2 normalization
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
1
vote
8
replies
1.1k
views
DEseq2 - design help
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
vote
2
replies
795
views
RESULTS() using contrast=c("condition","A","B"), the results would be A vs B correct?
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 10
0
votes
3
replies
1.0k
views
DESeq: Design model for paired design with two treatments
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
4
votes
6
replies
4.8k
views
DESeq2::sizeFactors() function does not output the sizeFactor table.
deseq2
updated 21 months ago by • 0 • written 6.8 years ago by ▴ 50
2
votes
1
reply
737
views
NAs create inaccuracies with BH corrections in deseq2
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
1
reply
927
views
Paired samples in DESeq2
R deseq2 Paired Samples
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
vote
1
reply
637
views
Script for fold change in DESeq for count data with 2 groups
deseq2 RNAseq
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
1
reply
628
views
Deseq2 two controls in design experiment
Deseq2 RNASeq
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 30
0
votes
9
replies
17k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2 pvalue visualization enhancedvolcano rnaseq
written 6.8 years ago by • 0
0
votes
2
replies
707
views
Error in checkFullRank(modelMatrix) :
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
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2
replies
3.5k
views
DESEq2 rownames: NULL
deseq2 R
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
3
replies
867
views
How to specify contrasts in DESeqDataSetFromMatrix
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
3
votes
1
reply
538
views
Detect genes that moved up or down over time in the same way in multiple strains, DESeq2
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
1
reply
2.5k
views
Low basemean and extremely high log2FC values, DESeq2
deseq2 interpretation
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
1
reply
1.2k
views
Highly uneven mapping rates and counts between samples
limma normalization deseq2
updated 6.8 years ago by ★ 29k • written 6.8 years ago by ▴ 420
0
votes
1
reply
844
views
DESeq2 3 factor design - whether to split up data or add interaction terms
deseq2 design
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
2
replies
2.1k
views
DESeq2- multifactor design- 3 conditions and 3 timepoints
deseq2 design
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
3
replies
946
views
Comparison of DESeq2 and BNB-R model
DESeq2 BNB-R
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
vote
3
replies
816
views
How to create 3 way interactions model for Deseq
deseq2
6.8 years ago sharmila.ahmad • 0
0
votes
0
replies
756
views
diffbind: use of continuous variables
diffbind deseq2
6.8 years ago janani.sundaresan • 0
1
vote
4
replies
3.1k
views
Cannot install DESeq2
deseq2
updated 6.8 years ago by ★ 6.6k • written 6.8 years ago by • 0
4,839 results • Page 54 of 97
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