Showing : Ensembl • reset
7
votes
26
replies
4.1k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 7 weeks ago by • 0 • written 5.0 years ago by ★ 3.8k
4
votes
17
replies
2.1k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 3.3 years ago by 3.9k • written 3.3 years ago by ▴ 10
3
votes
14
replies
3.4k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart error ensembl bioconductor ensembl mart
6.5 years ago daniel.carbajo • 0
0
votes
14
replies
1.4k
views
Error while opening Mart with biomaRt package
software error ensembl biomart
4.0 years ago loicborcard01 • 0
15
votes
13
replies
2.6k
views
celldex ensembl gene annotation issue
SingleR celldex HumanPrimaryCellAtlasData ensembl
updated 2.1 years ago by ▴ 10 • written 2.1 years ago by ▴ 20
2
votes
12
replies
2.6k
views
biomaRt does not return entrezgene id
bioconductor biomart entrez gene identifiers ensembl ensembl mart
updated 6.7 years ago by ▴ 800 • written 6.7 years ago by • 0
2
votes
11
replies
5.3k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 2.9 years ago by ★ 6.2k • written 3.2 years ago by • 0
4
votes
11
replies
1.6k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 4.0 years ago by ★ 3.0k • written 4.0 years ago by ▴ 10
6
votes
11
replies
2.9k
views
ensembldb from M.musculus NCBI37 v67 gtf
ensembldb NCBI37 v67 ensembl
5.9 years ago • updated 5.8 years ago floriandeckert ▴ 30
4
votes
9
replies
2.8k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 7.6 years ago by ▴ 20 • written 7.8 years ago by ▴ 800
8
votes
9
replies
4.6k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 22 months ago by 16k • written 22 months ago by ▴ 40
8
votes
8
replies
2.6k
views
biomaRt: drerio_gene_ensembl dataset missing
biomart ensembl ripseeker
updated 6.0 years ago by ★ 6.2k • written 6.0 years ago by ▴ 490
13
votes
8
replies
15k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 9.1 years ago by ▴ 800 • written 9.2 years ago by ▴ 90
10
votes
8
replies
2.5k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
4.4 years ago m93 ▴ 10
4
votes
8
replies
12k
views
Ensembl site unresponsive
ensembl biomart
updated 2.6 years ago by • 0 • written 3.2 years ago by ▴ 40
17
votes
7
replies
11k
views
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
deseq2 ensembl
updated 5.9 years ago by 64k • written 5.9 years ago by ▴ 150
0
votes
7
replies
2.3k
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 4.2 years ago by 64k • written 4.2 years ago by ▴ 30
1
vote
7
replies
945
views
News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
5.2 years ago shepherl 3.6k
3
votes
6
replies
1.8k
views
biomaRt: Ensembl -> Entrez conversion error?
biomart entrez gene identifiers ensembl conversion
updated 5.0 years ago by ★ 6.2k • written 5.0 years ago by ▴ 10
0
votes
6
replies
1.3k
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
5.8 years ago dusan.petrovic • 0
0
votes
6
replies
803
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 4.2 years ago by ★ 6.2k • written 4.2 years ago by ★ 1.3k
0
votes
6
replies
1.5k
views
Getting paralogus genes from biomart for mouse
biomart biomaRt Ensembl
updated 2.4 years ago by 3.9k • written 2.4 years ago by • 0
0
votes
6
replies
2.1k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws uniprot ensembl
updated 8.9 years ago by ★ 7.2k • written 8.9 years ago by ▴ 160
3
votes
6
replies
2.5k
views
Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
annotation ensembl annotationdbi
5.5 years ago vd4mmind • 0
0
votes
6
replies
1.3k
views
ENSEMBL causing issues replicating previous results
R ENSEMBL topGO
6.0 years ago snguyen268 • 0
2
votes
6
replies
1.9k
views
biomaRt Ensembl ID query returns NA in 'ensembl_gene_id', 'ensembl_transcript_id', etc.
biomart ensembl annotation
updated 6.4 years ago by ★ 6.2k • written 6.4 years ago by ▴ 30
1
vote
5
replies
2.6k
views
Ensembl bacteria not accessible from biomaRt
biomart ensembl
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
8
votes
5
replies
4.7k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 4.6 years ago by 64k • written 4.6 years ago by ▴ 100
4
votes
5
replies
1.3k
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 4.7 years ago by 64k • written 4.7 years ago by ▴ 10
0
votes
5
replies
4.3k
views
Ensembl biomaRt connection errors
software error biomart ensembl
updated 7.5 years ago by ▴ 70 • written 7.5 years ago by • 0
4
votes
5
replies
1.6k
views
ChIPpeakAnno getAnnotation request fail
chippeakanno biomart ensembl
7.9 years ago igor ▴ 40
7
votes
5
replies
5.5k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 8 weeks ago by • 0 • written 19 months ago by ▴ 40
0
votes
5
replies
1.6k
views
News: Ensembl 79 release is out!
Ensembl biomart release news News
updated 8.7 years ago by ★ 8.2k • written 8.7 years ago by ▴ 20
5
votes
5
replies
1.9k
views
News: Ensembl 88 is out!
ensembl ensembl mart biomart e!88 News
6.7 years ago Thomas Maurel ▴ 800
0
votes
5
replies
2.4k
views
getBM in loop
biomart ensembl curl
updated 5.9 years ago by ★ 6.2k • written 6.0 years ago by ▴ 40
0
votes
5
replies
1.4k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 7.3 years ago by ★ 1.2k • written 7.3 years ago by ▴ 10
6
votes
5
replies
7.9k
views
biomaRt: no access to Ensembl_75 (GRCh37.p13)
biomarRt ensembl
updated 9.1 years ago by • 0 • written 9.1 years ago by • 0
2
votes
4
replies
1.4k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 7 months ago by • 0 • written 5.0 years ago by • 0
0
votes
4
replies
1.7k
views
biomaRT getBM error
biomart getbm ensembl
updated 5.8 years ago by ★ 6.2k • written 5.8 years ago by • 0
4
votes
4
replies
1.4k
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 3.8 years ago by ★ 6.2k • written 3.8 years ago by ▴ 10
0
votes
4
replies
1.2k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.5 years ago by ★ 6.2k • written 4.5 years ago by • 0
2
votes
4
replies
1.5k
views
customProDB: issues getting dbSNP data for non-model organism
ensembl macaque dbsnp customprodb
updated 8.4 years ago by ▴ 50 • written 8.4 years ago by • 0
1
vote
4
replies
3.5k
views
ensembl not working...?
ensembl biomart
5.6 years ago JoeMG • 0
0
votes
4
replies
930
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
2
votes
3
replies
10k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 9.1 years ago by ▴ 800 • written 9.1 years ago by ▴ 120
1
vote
3
replies
2.2k
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 9 months ago by 3.9k • written 3.4 years ago by • 0
0
votes
3
replies
1.7k
views
How to produce a dataframe with unique ENTREZID to use in gage?
gage annotationdbi entrez ensembl
5.8 years ago colaneri ▴ 30
0
votes
3
replies
1.7k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 10
1
vote
3
replies
2.1k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
4.0 years ago dmgatti ▴ 10
0
votes
3
replies
2.2k
views
biomaRt fails for M.musculus annotation, Ensembl version 80
biomart ensembl
updated 8.3 years ago by ▴ 20 • written 8.3 years ago by ▴ 80
50 results • Page 1 of 1
Recent ...
Replies
Answer: Agilent Microarray Gene Oncology analysis gone wrong by Gordon Smyth 49k
Your use of `coef=1` is incorrect, for reasons explained in the limma User's Guide. If you had simply left `coef` at the default, then thin…
Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0
Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …
Comment: enrichGOgradient color change by James W. MacDonald 64k
You could look at my answer and extrapolate from there.
Comment: enrichGOgradient color change by WU • 0
I would like to ask how to make the counts legend black. Thank you.
Answer: Problems with FLOWAI by Alexander • 0
Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…
Votes
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
How to know if I should use voomWithQualityWeights() or not?
Awards • All
Popular Question to Gordon Smyth 49k
Popular Question to Lluís Revilla Sancho ▴ 720
Popular Question to Frederik Ziebell ▴ 20
Popular Question to Sam ▴ 10
Scholar to Rory Stark ★ 5.1k
Locations • All
Russia, 14 minutes ago
WEHI, Melbourne, Australia, 14 minutes ago
Russia, 40 minutes ago
Republic of Ireland, 44 minutes ago
Egypt, 1 hour ago
Traffic: 458 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6