Showing : Epigenetics • reset
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pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 14.8 years ago by ★ 4.3k • written 14.8 years ago by ★ 1.1k
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limma with interaction term
R biostatistics limma Epigenetics
12 weeks ago • updated 9 weeks ago Jitendra ▴ 10
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2
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1.7k
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Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 3.5 years ago by 50k • written 3.5 years ago by ▴ 20
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
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3
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edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 12.9 years ago by ▴ 320 • written 12.9 years ago by ▴ 260
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how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 12.4 years ago by 65k • written 12.4 years ago by ▴ 30
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
23 months ago Jitendra ▴ 10
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5
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606
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error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 6 months ago by 65k • written 6 months ago by ▴ 10
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1
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363
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Further analysis after limma regression output
statistics Epigenetics limma
updated 7 months ago by 65k • written 7 months ago by ▴ 10
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1.6k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90
3
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4
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865
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DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago Jitendra ▴ 10
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1.7k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.2 years ago by ▴ 60 • written 7.3 years ago by ▴ 120
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.7 years ago mattia pelizzola ▴ 200
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1.4k
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Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
12.7 years ago Martin Zenke ▴ 10
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IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
12.2 years ago Guest User ★ 13k
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
11.2 years ago stefano iacus ▴ 430
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Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
10.0 years ago Brian Herb ▴ 80
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1.6k
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ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
8.5 years ago jdangelo • 0
1
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1.7k
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
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2.7k
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Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
8.1 years ago asharm37 • 0
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1.4k
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News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
7.6 years ago Yuan Tian ▴ 90
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1.2k
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Job: PhD computational position - Milan
epigenetics transcription computational biology Job
6.8 years ago mattia pelizzola ▴ 200
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1.1k
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.1 years ago rmf ▴ 20
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825
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.1 years ago rmf ▴ 20
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981
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago Shamith.Samarajiwa ▴ 180
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720
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
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566
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normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.1 years ago Jitendra ▴ 10
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426
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rnbeads inference
epigenetics RnBeads
15 months ago Jitendra ▴ 10
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800
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Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
22 months ago xubeisi • 0
0
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3
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950
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batch effect in EPIC array data
statistics Epigenetics R
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
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8
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1.9k
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error in RnBeads installation
Epigenetics RnBeads R
2.2 years ago • updated 2.1 years ago Jitendra ▴ 10
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606
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
17 months ago whduke • 0
0
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844
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Job: Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation SingleCell Autism Neurogenesis Epigenetics
18 months ago sudhir.thakurela • 0
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561
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How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
14 months ago Jitendra ▴ 10
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1.6k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
16.3 years ago Jean Yee Hwa Yang ▴ 130
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483
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combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
13 months ago Jitendra ▴ 10
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1.1k
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.3 years ago Michael Lawrence ▴ 620
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
10.3 years ago Holger Klein ▴ 20
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1.3k
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Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
16.5 years ago French, Jef NIH/NIEHS ▴ 30
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
16.0 years ago Julian Lee ▴ 140
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930
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
15.8 years ago Martin Morgan 25k
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
15.4 years ago Dick Beyer ★ 1.4k
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
15.1 years ago Vincent Detours ▴ 80
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1.7k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
14.8 years ago Joern Toedling ▴ 450
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1.8k
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
14.5 years ago qPCR Platform - the reference in real-t… ▴ 170
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1.3k
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Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
12.7 years ago Qiong Lin ▴ 10
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1.4k
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
12.7 years ago stefano iacus ▴ 430
49 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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