Showing : Proteomics • reset
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147
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limma/voom for protein intensity data
limma proteomics voom
updated 6 weeks ago by ▴ 860 • written 6 weeks ago by ▴ 60
0
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1
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102
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How to pull-down gene/protein names from the database search, using R ?
proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics
updated 8 weeks ago by 43k • written 8 weeks ago by • 0
0
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5
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157
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In need of linear modeling help for differential expression (proteomics)
Proteomics limma vsn
updated 8 weeks ago by 43k • written 8 weeks ago by • 0
0
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0
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72
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How to handle the imputation and normalisation?
Proteomics DEP limma
10 weeks ago barrypraveen • 0
0
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1
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135
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How to remove batch effect on DEP protemics package?
Proteomics DEP MassSpectrometryData
updated 3 months ago by • 0 • written 3 months ago by • 0
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147
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what is the difference between iBAQ or LFQ?
Proteomics DEP limma
3 months ago barrypraveen • 0
0
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4
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222
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How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics limma MassSpectrometry
4 months ago barrypraveen • 0
4
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3
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467
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Differential protein/biomarker expression using limma: is that possible?
Proteomics NPX limma
updated 7 months ago by 43k • written 7 months ago by ▴ 10
5
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6
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429
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 7 months ago by 43k • written 7 months ago by ▴ 10
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189
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Limma design multi-level experiment with 3 time points
R proteomics limma
7 months ago ellen2270 • 0
0
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4
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267
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DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics DEP
7 months ago rina ▴ 20
0
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228
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
8 months ago Robert Castelo ★ 2.7k
2
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1
reply
420
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Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 8 months ago by 58k • written 8 months ago by ★ 1.5k
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308
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
10 months ago Laura • 0
1
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2
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253
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calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
10 months ago Oliver • 0
0
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3
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261
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Why I can not install rTANDEM?
MassSpectrometry Proteomics mzR
10 months ago Gilad • 0
1
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2
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267
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error in installation of 'org.Hs.eg.db'
proteomics GenomicSequence
updated 10 months ago by ▴ 40 • written 10 months ago by • 0
5
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6
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405
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possible package naming conflict
proteomics
10 months ago Tobias ▴ 30
1
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0
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219
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
10 months ago info ▴ 10
0
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0
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151
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Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow proteomics proteinProfiles
11 months ago yueli7 ▴ 10
0
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1
reply
287
views
R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 11 months ago by ▴ 890 • written 11 months ago by ▴ 10
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0
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253
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Job: Data Scientist Proteomics (100%), Biozentrum, University of Basel, Switzerland
Switzerland JobPosting Basel Proteomics
11 months ago Robert Ivanek ▴ 700
0
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3
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381
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Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 11 months ago by ▴ 270 • written 11 months ago by • 0
3
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0
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467
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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
12 months ago Johannes Rainer ★ 1.9k
2
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0
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275
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Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
13 months ago Johannes Rainer ★ 1.9k
1
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6
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782
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DEP package: Problems installing on macOS
software error DEP proteomics
updated 15 months ago by 1.5k • written 15 months ago by • 0
0
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0
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515
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer RNASeq proteomics Job visualisation
16 months ago Laurent Gatto 1.5k
0
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0
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148
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How to generate custom MS database using CustomProDB?
r proteomics
17 months ago nattzy94 • 0
2
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1
reply
264
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Maximum parsimony protein assembly/inference
rforproteomics proteomics msnid msnbase
19 months ago daniel.magnus.bader ▴ 40
2
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1
reply
222
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
20 months ago • updated 19 months ago harelarik ▴ 50
1
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0
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241
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News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
20 months ago Laurent Gatto 1.5k
1
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2
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519
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Proteomics: package/statistics to compare very different LFQ-proteomes
dep proteomics limma
21 months ago Rob • 0
0
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0
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297
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Job: Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
RNA-seq DNA-seq ATAC-seq proteomics microbiome Job
22 months ago lhuang7 ▴ 50
3
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0
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1.5k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
24 months ago • updated 22 months ago Gordon Smyth 43k
0
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456
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
22 months ago shepherl 2.8k
0
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0
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400
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News: course - Protemics with R and Bioconductor - 17-19 February 2020 in Berlin
Bioconductor R Proteomics News
23 months ago info ▴ 10
0
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0
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190
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proteoQC throwing error after running
ProteoQC Proteomics
23 months ago laural710 • 0
0
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2
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494
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Total Area Sum Intensity based Normalization for label-free quantitative proteomics
normalization proteomics label-free
23 months ago amolares • 0
0
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3
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477
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Writing a loop through multiple fasta files and named files (is it possible with MSGFplus?)
MSGF+ Proteomics r
updated 2.0 years ago by 25k • written 2.0 years ago by • 0
0
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0
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224
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DEP package - Understanding the results table
dep proteomics logFC
2.0 years ago rina ▴ 20
0
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0
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315
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DEP: TMT analysis from MaxQuant output
DEP TMT proteomics
2.1 years ago dparrine • 0
2
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0
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1.6k
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Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
2.1 years ago Laurent Gatto 1.5k
0
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0
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255
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News: Protemics with R and Bioconductor course in Berlin
R Proteomics News
2.1 years ago info ▴ 10
0
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0
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302
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
2.2 years ago tatabox • 0
0
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8
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1.4k
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Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 2.2 years ago by • 0 • written 3.8 years ago by ▴ 20
3
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3
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455
views
Clarification of results tables in DEP
DEP proteomics
updated 2.2 years ago by ▴ 70 • written 2.3 years ago by ▴ 480
1
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3
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433
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Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
Limma proteomics limma
updated 2.4 years ago by • 0 • written 2.4 years ago by • 0
2
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2
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360
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Where can I get functional bins for Arabidopsis thaliana genome (AGIs)
r proteomics RNA-Seq
updated 2.6 years ago by ▴ 180 • written 2.6 years ago by ▴ 10
0
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0
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310
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How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
2.6 years ago Wuschel ▴ 10
0
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2
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394
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Comparative proteome analysis of two different species
proteomics LC-MS/MS
updated 2.6 years ago by 1.5k • written 2.6 years ago by • 0
50 results • Page 1 of 1
Recent ...
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Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs) by Guido Hooiveld ★ 3.0k
That should be: http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/4378222.W_seafood_market_pneumonia_virus_1.goa. Found through the GOA…
Answer: Ensuring reproducibility in BiocParallel SingleCellExperiment workflows by Aaron Lun ★ 27k
I don't think that setting `RNGseed` inside `MulticoreParam` does what anyone really expects. See the discussion in https://github.com/Bioc…
Comment: BLAST-like alignment of a DNAString to a BSgenome? by Charles Plessy ▴ 130
Thanks Hervé. `annotate::blastSequences()` sends jobs to the NCBI server, so that is not exactly what I was looking for. I searched again …
Comment: TCL/TK in R by Bogdan ▴ 620
Thank you Mike. On my Ubuntu machine, before compiling R, I had tcl-dev and tk-dev already at the latest version. *tk-dev is already the …
Comment: TCL/TK in R by Mike Smith ★ 5.2k
Are you compiling R from source, or installing from the Ubuntu repositories via `apt-get install` ? I think the output of `capabilities()`…
Votes
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
Answer: How delete the AnnotationHub downloaded datasets
Answer: Error arrayQualityMetrics
Comment: Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error
Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
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