Showing : TCGAbiolinks • reset
2
votes
11
replies
3.7k
views
package or namespace load failed for TCGAbiolinks
tcgabiolinks
updated 6.6 years ago by ▴ 200 • written 6.7 years ago by • 0
1
vote
3
replies
3.1k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error maftools tcgabiolinks
updated 8 weeks ago by ▴ 20 • written 6.6 years ago by ▴ 100
2
votes
22
replies
4.3k
views
Error in 'colnames' while running case 1 of TCGABiolinks
tcgabiolinks Error in `colnames
8.3 years ago zeeniajagga • 0
0
votes
8
replies
2.6k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
7.6 years ago sabarinath.chandrasekharan ▴ 10
1
vote
2
replies
1.6k
views
TCGABiolinks::GDCquery() suddenly sending back unknown error
software error error tcgabiolinks GDCquery
updated 6.5 years ago by ▴ 40 • written 6.5 years ago by ▴ 10
6
votes
11
replies
3.0k
views
Error and weird result of TCGAanalyze_Normalization function using the R package TCGAbiolinks for normalization of raw HTSeq counts
tcgabiolinks rnaseq normalization EDASeq
updated 6.5 years ago by ▴ 50 • written 6.5 years ago by ▴ 830
6
votes
7
replies
2.6k
views
Differences between RTCGA and TCGAbiolinks data
r survival analysis rtcga tcgabiolinks mirna-seq
5.9 years ago atakanekiz ▴ 30
6
votes
3
replies
2.3k
views
TCGAbiolinks GDCquery Error: Parsing problems
tcgabiolinks
updated 6.6 years ago by ▴ 50 • written 6.6 years ago by ▴ 100
0
votes
5
replies
2.9k
views
Retrieve TCGA expression data for a single gene
TCGA TCGAbiolinks
updated 3.7 years ago by ▴ 260 • written 3.7 years ago by ▴ 40
0
votes
6
replies
3.1k
views
TCGAbiolinks DNA methylation analysis TCGAvisualize_meanMethylation
tcgabiolinks
updated 8.1 years ago by ▴ 270 • written 8.1 years ago by ▴ 10
1
vote
7
replies
2.0k
views
Cannot retrieve projects from TCGA using getGDCprojects function
tcgabiolinks TCGA software error
6.5 years ago jacorvar ▴ 40
0
votes
11
replies
3.2k
views
TCGAbiolinks GDCquery downloads a file that reads "message": "internal server error"
tcgabiolinks gdc
7.5 years ago jshelton • 0
4
votes
2
replies
2.3k
views
TCGA-biolink: GRCH38 RNA-seq, normalized counts matrix, Converting ensemble gene name into common gene name
tcgabiolinks grch38 annotation
updated 6.6 years ago by ▴ 270 • written 6.6 years ago by • 0
1
vote
3
replies
2.6k
views
Data download via TCGAbiolinks
tcgabiolinks
updated 7.0 years ago by • 0 • written 8.3 years ago by ▴ 10
3
votes
2
replies
2.2k
views
Difference in TCGA RNAseq expression values between GDC harmonized and legacy data
GDC TCGA tcgabiolinks
updated 2.1 years ago by • 0 • written 5.5 years ago by ▴ 10
7
votes
6
replies
2.4k
views
Analysis using TCGAbiolinks
tcgabiolinks triple negative breast cancer data sets
updated 6.4 years ago by ▴ 50 • written 6.4 years ago by ▴ 60
5
votes
4
replies
2.9k
views
HTSeq Counts no longer available
TCGAbiolinks
updated 2.0 years ago by ★ 1.4k • written 2.1 years ago by ▴ 30
0
votes
4
replies
2.3k
views
TCGA biolinks data download
tcgabiolinks
updated 7.8 years ago by ▴ 270 • written 7.9 years ago by ▴ 10
2
votes
5
replies
1.6k
views
GDCprepare() can never complete request ("Error: cannot allocate vector")
TCGAbiolinks TCGA
updated 2.1 years ago by • 0 • written 3.7 years ago by ▴ 40
0
votes
2
replies
2.6k
views
Unable to install TCGAbiolinks
tcgabiolinks
updated 6.7 years ago by 3.9k • written 6.7 years ago by • 0
2
votes
5
replies
3.6k
views
GDCdownload does not work
GDCdow tcgabiolinks error tcgadownload download_error
updated 5.4 years ago by ▴ 260 • written 5.4 years ago by • 0
1
vote
2
replies
1.4k
views
Problem with TCGAbiolinks Enrichment analysis
tcgabiolinks
updated 6.9 years ago by • 0 • written 7.0 years ago by ▴ 10
4
votes
20
replies
3.1k
views
TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks
updated 7.1 years ago by ★ 6.5k • written 7.1 years ago by ▴ 190
5
votes
11
replies
3.9k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils TCGAbiolinks GenomicDataCommons
updated 4.8 years ago by 700 • written 4.8 years ago by ★ 1.5k
1
vote
2
replies
1.2k
views
Downloading bt.exon_quantification with TCGAbiolinks
tcgabiolinks bug
8.1 years ago Marcel Ramos 700
0
votes
1
reply
1.2k
views
Error during GDCprepare
tcgabiolinks gdcprepare
updated 7.7 years ago by ▴ 270 • written 7.7 years ago by ▴ 10
0
votes
1
reply
2.1k
views
Missing the package called 'R.oo'. Please help me to fix, thanks.
TCGAbiolinks
updated 8.1 years ago by ▴ 150 • written 8.1 years ago by • 0
1
vote
6
replies
2.0k
views
Errors in TCGAbiolinks
tcgabiolinks
updated 7.8 years ago by ▴ 260 • written 7.8 years ago by ▴ 10
0
votes
7
replies
1.8k
views
TCGAbiolinks not downloading the 450k data
tcgabiolinks
updated 7.7 years ago by ▴ 260 • written 7.7 years ago by ▴ 190
0
votes
3
replies
4.3k
views
Problem in downloading data via TCGAbiolinks
tcgabiolinks tcgadownload
updated 3.0 years ago by ▴ 10 • written 7.8 years ago by ▴ 10
1
vote
3
replies
5.7k
views
package ‘TCGAbiolinks’ is not available (for R version 3.2.0)
software error TCGAbiolinks
updated 8.3 years ago by 25k • written 8.4 years ago by • 0
0
votes
2
replies
1.4k
views
Problems running TCGAbiolinks
tcgabiolinks
updated 7.8 years ago by ▴ 270 • written 7.8 years ago by • 0
0
votes
3
replies
1.4k
views
TCGA controlled data
R tcgabiolinks gdcprepare
7.0 years ago ugandhar.ch1 • 0
1
vote
5
replies
1.2k
views
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error tcgabiolinks
updated 6.5 years ago by ▴ 40 • written 6.5 years ago by • 0
1
vote
2
replies
1.5k
views
TCGAbiolinks download and read data error
TCGAbiolinks
updated 7.8 years ago by ▴ 270 • written 7.9 years ago by • 0
1
vote
1
reply
1.5k
views
TCGAbiolinks download error
tcgabiolinks TCGAdownload
updated 7.8 years ago by ▴ 270 • written 7.9 years ago by ▴ 20
0
votes
3
replies
1.3k
views
TCGAbiolinks Genome_Wide_SNP_6 data analysis
tcgabiolinks
updated 8.2 years ago by ▴ 260 • written 8.2 years ago by ▴ 10
0
votes
1
reply
791
views
Meaning of subtype_methylation.Clusters , subtype_miRNA.Clusters, subtype_CN.Clusters
tcgabiolinks
updated 7.3 years ago by ▴ 260 • written 7.3 years ago by • 0
0
votes
2
replies
3.7k
views
Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 7.1 years ago by ▴ 260 • written 7.3 years ago by • 0
1
vote
2
replies
1.6k
views
TCGAbiolinks 403 Forbidden Error
bug issue tcgabiolinks
updated 7.8 years ago by ▴ 270 • written 7.9 years ago by 700
0
votes
1
reply
1.1k
views
Error downloading the package
tcgabiolinks TCGA DOWNLOAD
updated 6.7 years ago by 65k • written 6.7 years ago by ▴ 30
0
votes
1
reply
1.3k
views
maybe problem with TCGAdownload function
TCGAbiolinks
7.9 years ago hibari.kyouya • 0
1
vote
3
replies
1.3k
views
TCGAbiolinks FTP address
tcgabiolinks
updated 8.3 years ago by ★ 6.5k • written 8.3 years ago by ▴ 10
1
vote
1
reply
963
views
Problem with using GDC_queryMaf()
tcgabiolinks maf mutations
updated 7.2 years ago by ▴ 260 • written 7.2 years ago by ▴ 150
1
vote
2
replies
1.6k
views
Multiple problems with TCGAbiolinks 2.2.6
software error tcgabiolinks ubuntu
updated 7.4 years ago by ▴ 260 • written 7.4 years ago by • 0
0
votes
2
replies
3.6k
views
Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
TCGA tcgabiolinks Error
6.9 years ago f.geist ▴ 20
0
votes
1
reply
822
views
Data type error
tcgabiolinks
updated 7.5 years ago by ▴ 260 • written 7.5 years ago by • 0
1
vote
1
reply
1.9k
views
Install problems on centos 7 of TCGAbiolinks
tcgabiolinks centos7
updated 7.5 years ago by ★ 6.5k • written 7.5 years ago by ▴ 40
2
votes
6
replies
2.1k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga tcgabiolinks microarray exons oligonucleotide
updated 8.0 years ago by ▴ 270 • written 8.0 years ago by • 0
1
vote
1
reply
804
views
TCGAbiolinks XML error
tcgabiolinks
updated 6.7 years ago by • 0 • written 6.9 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
United States, 1 minute ago
Sweden, 29 minutes ago
Hong Kong, 54 minutes ago
Hong Kong, 1 hour ago
Poland, 2 hours ago
Traffic: 406 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6