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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 22 months ago by 50k • written 22 months ago by • 0
0
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1
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694
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.5 years ago by 50k • written 2.5 years ago by • 0
0
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7
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1.0k
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Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
2.8 years ago AB • 0
3
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1
reply
774
views
Create a '.db' package for agilent
R agilent microarray
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 20
6
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4
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3.1k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 4.7 years ago by 65k • written 4.7 years ago by ▴ 30
1
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12
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2.3k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 30
1
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2
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1.0k
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covert from RGList to uRNAList
agilent agimicrorna
updated 5.5 years ago by 50k • written 5.5 years ago by ▴ 30
1
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2
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965
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
3
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4
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1.2k
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 10
1
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1
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1.1k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.1 years ago by 50k • written 6.1 years ago by • 0
2
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11
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2.0k
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Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
6.1 years ago CantExitVIM ▴ 10
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794
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Processing of agilent data
agilent
6.2 years ago Agaz Hussain Wani ▴ 260
0
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7
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1.8k
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Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 7.0 years ago by ★ 1.0k • written 7.0 years ago by ▴ 30
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1
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1.1k
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annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 7.3 years ago by 65k • written 7.3 years ago by ▴ 40
3
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4
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5.1k
views
LIMMA and Agilent single color
Annotation probe limma agilent
13.4 years ago • updated 7.3 years ago Gordon Smyth 50k
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2
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1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.5 years ago by 50k • written 7.5 years ago by ▴ 10
0
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9
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2.3k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
7.5 years ago Maximilian ▴ 10
3
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3
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3.9k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 80
3
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9
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2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.3 years ago Konstantinos Yeles ▴ 80
5
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10
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1.6k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
8.3 years ago pm2015 • 0
1
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2
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1.3k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 8.4 years ago by 65k • written 8.4 years ago by • 0
2
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3
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1.3k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 8.4 years ago by 65k • written 8.4 years ago by ★ 3.9k
0
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2
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1.9k
views
Agilent Data Normalization Method
limma agilent
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
2
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1
reply
4.0k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
8.6 years ago Konstantinos Yeles ▴ 80
3
votes
9
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2.0k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
2
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5
replies
2.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 10
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2
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1.3k
views
microarray agilent data
microarray agilent limma
updated 8.8 years ago by ▴ 130 • written 8.8 years ago by • 0
1
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2
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2.0k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 8.8 years ago by 50k • written 8.8 years ago by • 0
0
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1
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1.1k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 8.9 years ago by ★ 1.0k • written 8.9 years ago by ▴ 320
0
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2
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2.5k
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which Agilent annotation db?
agilent annotation
8.9 years ago Frederico Moraes Ferreira ▴ 100
0
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3
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1.7k
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problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
9.2 years ago wd ▴ 30
0
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2
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1.4k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 9.3 years ago by 50k • written 16.1 years ago by ★ 1.1k
0
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1
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1.6k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 150
1
vote
2
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2.1k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 240
2
votes
2
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2.1k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 9.5 years ago by 50k • written 9.5 years ago by • 0
2
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4
replies
2.3k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 9.6 years ago by 50k • written 9.6 years ago by • 0
2
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4
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3.1k
views
exporting limma log2 data
limma export log2 data agilent
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 110
37 results • Page 1 of 1
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Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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