Showing : annotationforge • reset
1
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22
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6.8k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor R annotationforge
updated 9.1 years ago by ▴ 10 • written 9.6 years ago by • 0
0
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5
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2.7k
views
Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
11.1 years ago oliver.tills • 0
0
votes
4
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3.0k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 11.4 years ago by ★ 7.2k • written 11.4 years ago by ★ 3.8k
5
votes
22
replies
7.0k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor annotationforge annotationdbi annotation r
updated 9.6 years ago by ★ 1.1k • written 11.0 years ago by • 0
2
votes
28
replies
7.5k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub AnnotationForge Pseudomonas_aeruginosa
updated 2.2 years ago by 68k • written 3.2 years ago by ▴ 10
4
votes
6
replies
2.2k
views
Query regarding to create custom organism database with AnnotationForge package (AnnotationForge::makeOrgPackageFromNCBI)
AnnotationForge OrganismData OrganismDb
2.7 years ago abhisek001 • 0
5
votes
13
replies
2.6k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
16 months ago KABILAN • 0
0
votes
12
replies
9.8k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
13.0 years ago James W. MacDonald 68k
0
votes
14
replies
6.6k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
9.1 years ago • updated 3.5 years ago Jenny Drnevich ★ 2.0k
3
votes
6
replies
3.4k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
9.0 years ago MOD • 0
2
votes
4
replies
1.6k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
2
replies
1.7k
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge makeorgpackage go
10.7 years ago Keith Hughitt ▴ 180
1
vote
4
replies
3.5k
views
AnnotationForge failed due to "Parameter 0 does not have length 1"
AnnotationForge
updated 10.1 years ago by ★ 6.8k • written 10.1 years ago by • 0
0
votes
3
replies
2.0k
views
error while making database using Annotationforge package
annotationforge error database
updated 9.6 years ago by ★ 4.1k • written 9.6 years ago by ▴ 10
3
votes
7
replies
4.2k
views
makeOrgPackage in AnnotationForge "GID" problem
annotationforge
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
3
votes
3
replies
1.4k
views
AnnotationForge run by three days and do not end
annotation AnnotationForge
5.8 years ago Marcelo Laia ▴ 450
1
vote
3
replies
1.7k
views
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
4
votes
5
replies
2.8k
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
1
reply
2.1k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 90
0
votes
1
reply
1.4k
views
an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 12.6 years ago by ★ 7.2k • written 12.6 years ago by ▴ 50
0
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1
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1.5k
views
答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
12.6 years ago joseph ▴ 50
1
vote
3
replies
2.4k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 220
0
votes
1
reply
1.7k
views
Error using makeDBPackage() from AnnotationForge package
Annotation probe AnnotationForge Annotation probe AnnotationForge
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 80
1
vote
1
reply
2.2k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 80
3
votes
3
replies
9.8k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge Annotation GO
updated 11.4 years ago by ★ 7.2k • written 11.5 years ago by ▴ 80
1
vote
2
replies
2.9k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge
updated 11.4 years ago by ★ 7.2k • written 11.4 years ago by ▴ 80
0
votes
2
replies
2.1k
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge
updated 10.3 years ago by 25k • written 10.3 years ago by • 0
0
votes
7
replies
7.1k
views
how to create an OrgDb package?
orgDb annotationForge
updated 3.9 years ago by • 0 • written 4.4 years ago by ▴ 20
4
votes
2
replies
7.2k
views
Install package without updating dependent package
Install AnnotationForge
4.2 years ago 亮 • 0
2
votes
4
replies
1.7k
views
Question about creating custom organism database with AnnotationForge
AnnotationForge
2.4 years ago • updated 2.3 years ago Adrian • 0
0
votes
3
replies
1.5k
views
How to handle multiple assay versions in a ChipDb annotation package
ChipDb AnnotationDbi AnnotationForge
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
votes
3
replies
1.8k
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub AnnotationDbi AnnotationForge
18 months ago Anna • 0
1
vote
8
replies
1.6k
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 16 months ago by 68k • written 22 months ago by • 0
1
vote
2
replies
1.1k
views
Erroe when using makeOrgPackageFromNCBI()
AnnotationForge
21 months ago Patadù ▴ 20
3
votes
7
replies
997
views
makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows:
AnnotationForge
updated 6 months ago by 68k • written 6 months ago by • 0
0
votes
1
reply
2.9k
views
Error in .testForValidKeys(x, keys, keytype, fks)
clusterProfiler AnnotationForge
updated 2.8 years ago by 4.3k • written 2.8 years ago by • 0
2
votes
5
replies
2.0k
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI
updated 2.4 years ago by 68k • written 2.4 years ago by ▴ 80
0
votes
10
replies
2.3k
views
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi
8.6 years ago gabciamm • 0
0
votes
1
reply
1.9k
views
AnnotationForge, RNAseq, and non-model organism
AnnotationForge annotationforge nonmodel rnaseq
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
2
votes
2
replies
1.7k
views
Queries around makeOrgPackageFromNCBI
R software error annotationforge
updated 7.8 years ago by ★ 4.1k • written 7.8 years ago by • 0
1
vote
3
replies
1.9k
views
Running GO analysis via Prostar
prostar proteomics rforproteomics annotationforge
updated 7.7 years ago by ▴ 10 • written 7.7 years ago by ▴ 20
1
vote
7
replies
2.2k
views
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
0
votes
7
replies
3.0k
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 7.0 years ago by 68k • written 7.0 years ago by • 0
0
votes
2
replies
1.3k
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
0
votes
2
replies
2.4k
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
5
votes
7
replies
3.0k
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis
updated 2.9 years ago by ▴ 50 • written 6.0 years ago by ▴ 20
0
votes
4
replies
1.8k
views
AnnotationForge not working for building custom org packages
AnnotationForge Marc Carlson Hervé Pagès
updated 5.8 years ago by 68k • written 5.9 years ago by • 0
1
vote
1
reply
2.4k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 5.8 years ago by ★ 4.0k • written 5.8 years ago by • 0
0
votes
3
replies
2.0k
views
AnnotationForge: makeOrgPackageFromNCBI Error in function (type, msg, asError = TRUE) : FTP response timeout
AnnotationForge
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by • 0
1
vote
5
replies
2.5k
views
Gene ID conversion for pathway enrichment analysis of differentially expressed genes
GeneIDConversion AnnotationForge
updated 4.9 years ago by ★ 4.1k • written 4.9 years ago by • 0
64 results • Page 1 of 2
Recent ...
Replies
Answer: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
I'm not familiar with the packages you mention, but the whole reason why Bioconductor has versions is that code and annotation change. Code…
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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Scholar to Gordon Smyth 53k
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