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Showing :
crisprseek
•
reset
0
votes
1
reply
780
views
extendedSequences length is not the required for DeepCpf1 (34bp)
CRISPRseek
2.7 years ago
Miguel
• 0
0
votes
5
replies
3.9k
views
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows
CRISPRseek
3.2 years ago • updated 3.1 years ago
Miguel
• 0
1
vote
2
replies
1.1k
views
CRISPRseek package: offTargetAnalysis() error with mouse genome
CRISPRseek
3.2 years ago
nderian
▴ 10
0
votes
2
replies
1.0k
views
CRISPRseek package: findgRNAs error
CRISPRseek
3.3 years ago
nderian
▴ 10
4
votes
3
replies
1.1k
views
Improving the run-time of offTargetAnalysis()
CRISPRseek
updated 3.8 years ago by
Daniel
• 0 • written 4.3 years ago by
xenon
▴ 40
0
votes
2
replies
993
views
CRISPRseek package: 5’ PAM?
CRISPRseek
3.9 years ago
nderian
▴ 10
2
votes
7
replies
3.2k
views
CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") interpretation
CRISPRseek
4.3 years ago • updated 4.1 years ago
xenon
▴ 40
1
vote
1
reply
904
views
Using a DNAStringSet of guideRNA+PAM sequences in offTargetAnalysis()
CRISPRseek
updated 4.3 years ago by
Julie Zhu
★ 4.3k • written 4.3 years ago by
xenon
▴ 40
4
votes
1
reply
987
views
CRISPRSeek Results files column interpretation
CRISPRseek
updated 4.3 years ago by
Julie Zhu
★ 4.3k • written 4.3 years ago by
xenon
▴ 40
0
votes
1
reply
804
views
CRISPRseek base editor
CRISPRseek
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
s.islambey
• 0
6
votes
14
replies
2.5k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 4.5 years ago by
Julie Zhu
★ 4.3k • written 4.5 years ago by
Dawid G. Nowak
▴ 40
3
votes
10
replies
1.8k
views
CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coercion
CRISPRseek
Error in hash
NAs introduced by coercion
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
nils.hassel
• 0
0
votes
2
replies
983
views
gRNA design for prime editing using CRISPRseek
CRISPRseek
pegRNA
prime editing gRNA
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
giti_gazisoltani
• 0
0
votes
5
replies
1.4k
views
CRISPRseek help to generate gRNAs for CRISPRi library
CRISPRseek
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Lucka387
• 0
0
votes
1
reply
1.0k
views
CRISPRseek - adding CRISPRscan score
CRISPRseek
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
ptgriffin
• 0
6
votes
12
replies
2.1k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek
software error
5.3 years ago
nils.hassel
• 0
0
votes
4
replies
1.3k
views
CRISPRseek:::findgRNAs paired gRNAs with PAM inward orientation
CRISPRseek
paired gRNA
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
saba.parvez
• 0
0
votes
2
replies
2.5k
views
CRISPRseek question on scoring
CRISPRseek
10.5 years ago • updated 6.0 years ago
Julie Zhu
★ 4.3k
1
vote
1
reply
928
views
CRISPRSeek module output - summary file: topN.offtargettotalscore
CRISPRSeek
updated 6.0 years ago by
Julie Zhu
★ 4.3k • written 6.0 years ago by
Nan
• 0
5
votes
11
replies
1.8k
views
CRISPRseek Unusual Error
crisprseek
updated 6.0 years ago by
Julie Zhu
★ 4.3k • written 6.0 years ago by
Dawid G. Nowak
▴ 40
0
votes
2
replies
1.6k
views
Problem installing CRISPRseek
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
ldumas9
• 0
0
votes
1
reply
1.1k
views
CRISPRseek: offTargetAnalysis -> buildFeatureVectorForScoring increase max.mismatch error
crisprseek
offtargetanalysis
updated 6.6 years ago by
Julie Zhu
★ 4.3k • written 6.6 years ago by
jacob.bradford
• 0
1
vote
2
replies
1.1k
views
A unexpected error occurred when using CRISPRseek package
crisprseek
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
prokaryote23
• 0
1
vote
2
replies
1.2k
views
How to understand Summary.xls in output of CRISPRseek
crisprseek
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
Ou, Jianhong
★ 1.3k
4
votes
12
replies
2.1k
views
CFDscore calculations used in CRISPRseek
crisprseek
CFDscore
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
Dawid G. Nowak
▴ 40
0
votes
5
replies
1.8k
views
CRISPRseek offTargetAnalysis errors
CRISPRseek
7.1 years ago
joyce
• 0
0
votes
0
replies
1.7k
views
replacement has X rows, data has Y rows
crisprseek
7.1 years ago
robert_w_link
• 0
0
votes
1
reply
1.2k
views
CRISPRseek offTargetAnalysis error
crisprseek
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
joyce
• 0
0
votes
1
reply
1.5k
views
CRISPRseek gRNA efficacy
crisprseek
updated 7.3 years ago by
Julie Zhu
★ 4.3k • written 7.3 years ago by
joyce
• 0
0
votes
2
replies
1.2k
views
Does CRISPRSEEK work on previously unknown genomes?
crisprseek
unknown genome
updated 7.3 years ago by
Julie Zhu
★ 4.3k • written 7.3 years ago by
yhuang2
• 0
0
votes
6
replies
2.1k
views
CRISPRseek CFD score
crisprseek
updated 7.3 years ago by
Julie Zhu
★ 4.3k • written 7.3 years ago by
joyce
• 0
0
votes
1
reply
1.6k
views
could not find function "hash"
crisprseek
updated 7.3 years ago by
Julie Zhu
★ 4.3k • written 7.3 years ago by
joyce
• 0
5
votes
24
replies
4.0k
views
CRISPRseek scoring clarification
crisprseek
updated 7.3 years ago by
Julie Zhu
★ 4.3k • written 8.0 years ago by
elspeth.ransom
• 0
0
votes
1
reply
1.1k
views
CFD scores for searchHits?
crisprseek
updated 7.4 years ago by
Julie Zhu
★ 4.3k • written 7.4 years ago by
joyce
• 0
0
votes
0
replies
1000
views
Interpretation of Score vs gRNA efficacy
crisprseek
7.4 years ago
robert_w_link
• 0
0
votes
0
replies
1.3k
views
Off Target region
offtarget analysis
crisprseek
7.5 years ago
susobhanbaidya
• 0
0
votes
1
reply
1.7k
views
Compareequence function is not running
software error
compilation error
CRISPRseek
updated 7.5 years ago by
daniel.vantwisk
▴ 50 • written 7.5 years ago by
susobhanbaidya
• 0
0
votes
2
replies
1.4k
views
"NNG[A|G][A|G]N$" in CRISPRseek code
crisprseek
SaCas9
PAM
7.6 years ago • updated 7.5 years ago
bhanson1806
• 0
2
votes
3
replies
1.9k
views
offTargetAnalysis() Error in weights %*% mismatch.pos : non-conformable arguments (CRISPRSeek)
CRISPRseek
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
robert_w_link
• 0
0
votes
1
reply
1.3k
views
CRISPRseek How to get a correct result of searchHits2 ?
crisprseek
graph
updated 7.6 years ago by
Julie Zhu
★ 4.3k • written 7.6 years ago by
liuyue235
• 0
1
vote
8
replies
2.1k
views
CRISPRseek with genome not available in BSgenome
bsgenome
crisprseek
updated 7.6 years ago by
Julie Zhu
★ 4.3k • written 7.9 years ago by
millepattes.intersites
• 0
0
votes
3
replies
1.4k
views
CRISPRseek with Doench 2016 scores
crisprseek
updated 7.7 years ago by
Julie Zhu
★ 4.3k • written 7.7 years ago by
pavitrarc
▴ 20
0
votes
1
reply
1.1k
views
tilling sgRNA library design
bioconductor
crisprseek
updated 7.9 years ago by
Julie Zhu
★ 4.3k • written 7.9 years ago by
renxj2008
• 0
0
votes
6
replies
1.7k
views
CRISPRseed gRNA.pattern is not producing expected result
crisprseek
updated 7.9 years ago by
Julie Zhu
★ 4.3k • written 7.9 years ago by
prp291
• 0
0
votes
5
replies
1.7k
views
CRISPRseek prediction of truncated Nme sgRNA and getting error message
crisprseek
updated 8.0 years ago by
Julie Zhu
★ 4.3k • written 8.0 years ago by
Daniel
• 0
0
votes
38
replies
4.6k
views
running off target analaysis
crisprseek
8.0 years ago
Yap-JM
• 0
0
votes
2
replies
1.2k
views
CRISPRseek offTargetAnalysis score
bioconductor
crisprseek
offtarget analysis
8.3 years ago
Marie
• 0
0
votes
3
replies
1.4k
views
CRISPRseek Ouput File Name
CRISPRseek
OutputFileName
updated 8.3 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
bhanson1806
• 0
0
votes
1
reply
1.3k
views
Help with CRISPRseek inputFilePath
CRISPRseek
input files
updated 8.3 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
bhanson1806
• 0
3
votes
2
replies
1.5k
views
CRISPRseek with (rough) Draft Genome
crisprseek
grna searching
bsgenome forge
offtarget analysis
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
rajewski23
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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