Showing : enrichplot • reset
0
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715
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Error in cnetplot
enrichplot clusterProfiler
updated 9 months ago by ★ 4.1k • written 10 months ago by • 0
8
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6
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9.6k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 20 months ago by ▴ 30 • written 6.7 years ago by ▴ 180
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2
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3.0k
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 4 months ago by • 0 • written 21 months ago by • 0
2
votes
2
replies
1.9k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
22 months ago Eva ▴ 10
2
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6
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5.6k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
23 months ago Tobias • 0
0
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1
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1.0k
views
visualizing GSEA showCategory question
enrichplot
updated 24 months ago by 68k • written 24 months ago by • 0
0
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2
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1.5k
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 2.2 years ago by 68k • written 2.3 years ago by • 0
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0
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736
views
HeatPlot - Genes selections
enrichplot stringr heatplot
2.4 years ago ruba-mahmoud • 0
0
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3
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3.3k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 2.2 years ago by • 0 • written 2.4 years ago by • 0
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5
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2.4k
views
plot enrichment results
enrichplot clusterProfiler
updated 2.5 years ago by ▴ 760 • written 2.6 years ago by • 0
2
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4
replies
3.4k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
2.6 years ago Tyroone • 0
0
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1
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2.1k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 2.8 years ago by ★ 4.1k • written 2.8 years ago by • 0
0
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1
reply
1.1k
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
0
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5
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4.0k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 2.4 years ago by • 0 • written 3.1 years ago by • 0
2
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3
replies
4.0k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.3 years ago by ▴ 150 • written 3.3 years ago by ▴ 10
0
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1
reply
2.8k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 3.3 years ago by ★ 1.2k • written 3.3 years ago by • 0
3
votes
5
replies
5.3k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.4 years ago by ★ 1.2k • written 3.6 years ago by ▴ 40
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votes
3
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6.9k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by ▴ 30
1
vote
3
replies
11k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.8 years ago by ★ 3.4k • written 3.8 years ago by • 0
0
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1
reply
1.7k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.8 years ago by • 0 • written 3.9 years ago by ▴ 10
5
votes
13
replies
6.8k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.8 years ago by ▴ 50 • written 3.8 years ago by • 0
2
votes
1
reply
2.2k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
4.1 years ago fatimaruizdelabastida ▴ 10
0
votes
1
reply
2.4k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.2 years ago by • 0 • written 4.2 years ago by ▴ 10
0
votes
2
replies
2.1k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.3 years ago Adarsh • 0
2
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4
replies
4.5k
views
enrichDGN result can't be visualised by barplot
enrichplot
4.3 years ago Pahi ▴ 10
0
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0
replies
1.9k
views
EnrichGO
R enrichplot
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
1
vote
4
replies
7.5k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.8 years ago by • 0 • written 4.5 years ago by • 0
2
votes
6
replies
9.6k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
5.1 years ago • updated 5.0 years ago Emilia ▴ 40
0
votes
1
reply
1.9k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 5.0 years ago by ▴ 40 • written 5.1 years ago by • 0
2
votes
1
reply
1.1k
views
Parsing geoms to enrichplot
enrichplot
5.4 years ago Francois Marchildon ▴ 20
0
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0
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1.4k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.7 years ago jan.soderman • 0
0
votes
1
reply
2.9k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 6.0 years ago by ★ 4.1k • written 6.0 years ago by • 0
2
votes
5
replies
3.3k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
written 6.0 years ago by ▴ 30
0
votes
0
replies
1.7k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.9 years ago yurigorelik ▴ 10
0
votes
0
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2.2k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
7.6 years ago jan.soderman • 0
36 results • Page 1 of 1
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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
Popular Question to Gordon Smyth 53k
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