Showing : enrichplot • reset
8
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6
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6.2k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 7 months ago by ▴ 30 • written 5.6 years ago by ▴ 160
0
votes
1
reply
1.3k
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
2
votes
2
replies
934
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
9 months ago Eva ▴ 10
2
votes
6
replies
2.9k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
10 months ago Tobias • 0
0
votes
1
reply
580
views
visualizing GSEA showCategory question
enrichplot
updated 11 months ago by 67k • written 11 months ago by • 0
0
votes
2
replies
994
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 14 months ago by 67k • written 14 months ago by • 0
0
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0
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555
views
HeatPlot - Genes selections
enrichplot stringr heatplot
15 months ago ruba-mahmoud • 0
0
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3
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2.2k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 14 months ago by • 0 • written 16 months ago by • 0
0
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5
replies
1.6k
views
plot enrichment results
enrichplot clusterProfiler
updated 17 months ago by ▴ 760 • written 18 months ago by • 0
2
votes
4
replies
2.4k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
19 months ago Tyroone • 0
0
votes
1
reply
1.6k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 21 months ago by ★ 4.1k • written 21 months ago by • 0
0
votes
1
reply
852
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 23 months ago by 43k • written 23 months ago by • 0
0
votes
5
replies
2.9k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 15 months ago by • 0 • written 2.0 years ago by • 0
2
votes
3
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3.1k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 2.2 years ago by ▴ 140 • written 2.2 years ago by ▴ 10
0
votes
1
reply
2.1k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 2.2 years ago by ★ 1.2k • written 2.2 years ago by • 0
3
votes
5
replies
4.2k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 2.3 years ago by ★ 1.2k • written 2.6 years ago by ▴ 40
0
votes
3
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5.0k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 2.4 years ago by ★ 4.1k • written 2.5 years ago by ▴ 10
1
vote
1
reply
1.3k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 2.5 years ago by ★ 4.1k • written 2.5 years ago by ▴ 30
1
vote
3
replies
7.8k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.7 years ago by ★ 3.4k • written 2.7 years ago by • 0
0
votes
1
reply
1.3k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.7 years ago by • 0 • written 2.8 years ago by ▴ 10
5
votes
13
replies
5.3k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.8 years ago by ▴ 50 • written 2.8 years ago by • 0
2
votes
1
reply
1.8k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
3.1 years ago fatimaruizdelabastida ▴ 10
0
votes
1
reply
1.8k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 3.1 years ago by • 0 • written 3.1 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
3.2 years ago Adarsh • 0
2
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4
replies
3.4k
views
enrichDGN result can't be visualised by barplot
enrichplot
3.2 years ago Pahi ▴ 10
0
votes
0
replies
1.5k
views
EnrichGO
R enrichplot
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
1
vote
4
replies
5.6k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.7 years ago by • 0 • written 3.4 years ago by • 0
2
votes
6
replies
7.9k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
4.0 years ago • updated 3.9 years ago Emilia ▴ 40
0
votes
1
reply
1.6k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.0 years ago by ▴ 40 • written 4.0 years ago by • 0
2
votes
1
reply
873
views
Parsing geoms to enrichplot
enrichplot
4.4 years ago Francois Marchildon ▴ 20
0
votes
0
replies
1.2k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.6 years ago jan.soderman • 0
0
votes
1
reply
2.4k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 4.9 years ago by ★ 4.1k • written 4.9 years ago by • 0
2
votes
4
replies
2.6k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 4.9 years ago by 67k • written 4.9 years ago by ▴ 30
0
votes
0
replies
1.4k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
5.8 years ago yurigorelik ▴ 10
0
votes
0
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1.8k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
6.5 years ago jan.soderman • 0
35 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
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C: edgeR and lack of counts ID on CPM matrix
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A: importing RSEM data into DESeq2
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