Showing : enrichplot • reset
0
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690
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Error in cnetplot
enrichplot clusterProfiler
updated 9 months ago by ★ 4.1k • written 9 months ago by • 0
8
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6
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9.5k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 19 months ago by ▴ 30 • written 6.7 years ago by ▴ 180
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2
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3.0k
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 4 months ago by • 0 • written 21 months ago by • 0
2
votes
2
replies
1.8k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
22 months ago Eva ▴ 10
2
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6
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5.5k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
23 months ago • updated 22 months ago Tobias • 0
0
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1
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1.0k
views
visualizing GSEA showCategory question
enrichplot
updated 23 months ago by 68k • written 23 months ago by • 0
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2
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1.5k
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
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0
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734
views
HeatPlot - Genes selections
enrichplot stringr heatplot
2.3 years ago ruba-mahmoud • 0
0
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3
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3.3k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 2.2 years ago by • 0 • written 2.4 years ago by • 0
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5
replies
2.3k
views
plot enrichment results
enrichplot clusterProfiler
updated 2.5 years ago by ▴ 760 • written 2.5 years ago by • 0
2
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4
replies
3.3k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
2.6 years ago Tyroone • 0
0
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1
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2.1k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 2.8 years ago by ★ 4.1k • written 2.8 years ago by • 0
0
votes
1
reply
1.1k
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
0
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5
replies
4.0k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 2.4 years ago by • 0 • written 3.1 years ago by • 0
2
votes
3
replies
4.0k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.3 years ago by ▴ 150 • written 3.3 years ago by ▴ 10
0
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1
reply
2.8k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 3.2 years ago by ★ 1.2k • written 3.3 years ago by • 0
3
votes
5
replies
5.3k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.4 years ago by ★ 1.2k • written 3.6 years ago by ▴ 40
0
votes
3
replies
6.8k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by ▴ 30
1
vote
3
replies
11k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.8 years ago by ★ 3.4k • written 3.8 years ago by • 0
0
votes
1
reply
1.7k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.8 years ago by • 0 • written 3.9 years ago by ▴ 10
5
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13
replies
6.8k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.8 years ago by ▴ 50 • written 3.8 years ago by • 0
2
votes
1
reply
2.2k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
4.1 years ago fatimaruizdelabastida ▴ 10
0
votes
1
reply
2.4k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.1 years ago by • 0 • written 4.1 years ago by ▴ 10
0
votes
2
replies
2.1k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.2 years ago Adarsh • 0
2
votes
4
replies
4.5k
views
enrichDGN result can't be visualised by barplot
enrichplot
4.3 years ago Pahi ▴ 10
0
votes
0
replies
1.9k
views
EnrichGO
R enrichplot
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
1
vote
4
replies
7.5k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.8 years ago by • 0 • written 4.5 years ago by • 0
2
votes
6
replies
9.6k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
5.0 years ago Emilia ▴ 40
0
votes
1
reply
1.9k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 5.0 years ago by ▴ 40 • written 5.1 years ago by • 0
2
votes
1
reply
1.1k
views
Parsing geoms to enrichplot
enrichplot
5.4 years ago Francois Marchildon ▴ 20
0
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0
replies
1.4k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.7 years ago jan.soderman • 0
0
votes
1
reply
2.9k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 5.9 years ago by ★ 4.1k • written 6.0 years ago by • 0
2
votes
5
replies
3.3k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
written 6.0 years ago by ▴ 30
0
votes
0
replies
1.7k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.9 years ago yurigorelik ▴ 10
0
votes
0
replies
2.2k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
7.6 years ago jan.soderman • 0
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
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