Showing : enrichplot • reset
0
votes
1
reply
558
views
Error in cnetplot
enrichplot clusterProfiler
updated 7 months ago by ★ 4.1k • written 7 months ago by • 0
8
votes
6
replies
8.7k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 17 months ago by ▴ 30 • written 6.5 years ago by ▴ 180
0
votes
2
replies
2.7k
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 10 weeks ago by • 0 • written 19 months ago by • 0
2
votes
2
replies
1.7k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
19 months ago Eva ▴ 10
2
votes
6
replies
5.2k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
21 months ago • updated 20 months ago Tobias • 0
0
votes
1
reply
935
views
visualizing GSEA showCategory question
enrichplot
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
2
replies
1.4k
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
votes
0
replies
702
views
HeatPlot - Genes selections
enrichplot stringr heatplot
2.2 years ago ruba-mahmoud • 0
0
votes
3
replies
3.1k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 2.0 years ago by • 0 • written 2.2 years ago by • 0
0
votes
5
replies
2.2k
views
plot enrichment results
enrichplot clusterProfiler
updated 2.3 years ago by ▴ 760 • written 2.4 years ago by • 0
2
votes
4
replies
3.2k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
2.4 years ago Tyroone • 0
0
votes
1
reply
2.0k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by • 0
0
votes
1
reply
1.0k
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 2.8 years ago by 43k • written 2.8 years ago by • 0
0
votes
5
replies
3.8k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 2.2 years ago by • 0 • written 2.9 years ago by • 0
2
votes
3
replies
3.8k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.1 years ago by ▴ 150 • written 3.1 years ago by ▴ 10
0
votes
1
reply
2.7k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 3.1 years ago by ★ 1.2k • written 3.1 years ago by • 0
3
votes
5
replies
5.2k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.2 years ago by ★ 1.2k • written 3.4 years ago by ▴ 40
0
votes
3
replies
6.5k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.3 years ago by ★ 4.1k • written 3.3 years ago by ▴ 10
1
vote
1
reply
1.7k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by ▴ 30
1
vote
3
replies
10k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.6 years ago by ★ 3.4k • written 3.6 years ago by • 0
0
votes
1
reply
1.6k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.6 years ago by • 0 • written 3.7 years ago by ▴ 10
5
votes
13
replies
6.6k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.6 years ago by ▴ 50 • written 3.6 years ago by • 0
2
votes
1
reply
2.1k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
3.9 years ago fatimaruizdelabastida ▴ 10
0
votes
1
reply
2.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.0 years ago by • 0 • written 4.0 years ago by ▴ 10
0
votes
2
replies
2.0k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.1 years ago Adarsh • 0
2
votes
4
replies
4.3k
views
enrichDGN result can't be visualised by barplot
enrichplot
4.1 years ago Pahi ▴ 10
0
votes
0
replies
1.8k
views
EnrichGO
R enrichplot
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
1
vote
4
replies
7.2k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.6 years ago by • 0 • written 4.3 years ago by • 0
2
votes
6
replies
9.3k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
4.9 years ago • updated 4.8 years ago Emilia ▴ 40
0
votes
1
reply
1.9k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.8 years ago by ▴ 40 • written 4.9 years ago by • 0
2
votes
1
reply
1.0k
views
Parsing geoms to enrichplot
enrichplot
5.2 years ago Francois Marchildon ▴ 20
0
votes
0
replies
1.4k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.5 years ago jan.soderman • 0
0
votes
1
reply
2.8k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 5.8 years ago by ★ 4.1k • written 5.8 years ago by • 0
2
votes
5
replies
3.1k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
written 5.8 years ago by ▴ 30
0
votes
0
replies
1.6k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.7 years ago yurigorelik ▴ 10
0
votes
0
replies
2.2k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
7.4 years ago jan.soderman • 0
36 results • Page 1 of 1
Recent ...
Replies
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Highly DE genes but small count difference within conditions by shy.hippopotamus.yxmb • 0
Monkey Mart: The Ultimate Gaming Marketplace Experience https://monkeymart.one/
Comment: Highly DE genes but small count difference within conditions by shy.hippopotamus.yxmb • 0
Enter the world of Monkey Mart, where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trad…
Comment: Highly DE genes but small count difference within conditions by shy.hippopotamus.yxmb • 0
Enter the world of , where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trade and conne…
Comment: copy number/LOH for Affy 100K by igkryycpinmshzugby • 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Ou, Jianhong ★ 1.3k
Locations • All
United States, 11 minutes ago
United States, 16 minutes ago
United States, 20 minutes ago
Germany, 40 minutes ago
Denmark, 1 hour ago
Traffic: 1177 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6