Showing : enrichplot • reset
0
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460
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Error in cnetplot
enrichplot clusterProfiler
updated 5 months ago by ★ 4.1k • written 5 months ago by • 0
8
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6
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8.5k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 15 months ago by ▴ 30 • written 6.3 years ago by ▴ 180
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2
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2.4k
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 6 days ago by • 0 • written 16 months ago by • 0
2
votes
2
replies
1.6k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
17 months ago Eva ▴ 10
2
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6
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5.0k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
19 months ago • updated 18 months ago Tobias • 0
0
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1
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884
views
visualizing GSEA showCategory question
enrichplot
updated 19 months ago by 68k • written 19 months ago by • 0
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2
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1.4k
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 22 months ago by 68k • written 22 months ago by • 0
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671
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HeatPlot - Genes selections
enrichplot stringr heatplot
24 months ago ruba-mahmoud • 0
0
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3
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3.0k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 22 months ago by • 0 • written 2.0 years ago by • 0
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5
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2.1k
views
plot enrichment results
enrichplot clusterProfiler
updated 2.1 years ago by ▴ 760 • written 2.2 years ago by • 0
2
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4
replies
3.1k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
2.3 years ago Tyroone • 0
0
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1
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1.9k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 2.4 years ago by ★ 4.1k • written 2.5 years ago by • 0
0
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1
reply
985
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
0
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5
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3.6k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 24 months ago by • 0 • written 2.7 years ago by • 0
2
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3
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3.7k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 2.9 years ago by ▴ 150 • written 2.9 years ago by ▴ 10
0
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1
reply
2.6k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 2.9 years ago by ★ 1.2k • written 2.9 years ago by • 0
3
votes
5
replies
5.0k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.0 years ago by ★ 1.2k • written 3.2 years ago by ▴ 40
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3
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6.4k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by ▴ 10
1
vote
1
reply
1.6k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by ▴ 30
1
vote
3
replies
10.0k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.4 years ago by ★ 3.4k • written 3.4 years ago by • 0
0
votes
1
reply
1.6k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.4 years ago by • 0 • written 3.5 years ago by ▴ 10
5
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13
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6.5k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.4 years ago by ▴ 50 • written 3.4 years ago by • 0
2
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1
reply
2.0k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
3.7 years ago fatimaruizdelabastida ▴ 10
0
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1
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2.2k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 3.8 years ago by • 0 • written 3.8 years ago by ▴ 10
0
votes
2
replies
2.0k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
3.9 years ago Adarsh • 0
2
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4
replies
4.2k
views
enrichDGN result can't be visualised by barplot
enrichplot
3.9 years ago Pahi ▴ 10
0
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0
replies
1.8k
views
EnrichGO
R enrichplot
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
1
vote
4
replies
7.1k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.4 years ago by • 0 • written 4.1 years ago by • 0
2
votes
6
replies
9.2k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
4.7 years ago • updated 4.6 years ago Emilia ▴ 40
0
votes
1
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1.8k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.6 years ago by ▴ 40 • written 4.7 years ago by • 0
2
votes
1
reply
996
views
Parsing geoms to enrichplot
enrichplot
5.1 years ago Francois Marchildon ▴ 20
0
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0
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1.3k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.3 years ago jan.soderman • 0
0
votes
1
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2.7k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 5.6 years ago by ★ 4.1k • written 5.6 years ago by • 0
2
votes
4
replies
3.0k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 30
0
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0
replies
1.6k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.5 years ago yurigorelik ▴ 10
0
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0
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2.1k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
7.2 years ago jan.soderman • 0
36 results • Page 1 of 1
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Replies
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Your approach 1 is a bad idea. Subtracting the gene counts won't do what you want to do. I would personally check to see if there is any…
Comment: Can NanoString data be analyzed using DESeq2? by James W. MacDonald 68k
You can always discard, although you can also retain them to check for unexpected differences.
Comment: DESeq2 on NanoString Data by Michael Love 43k
Yes, if I discern a batch from EDA including looking at PCs, sample correlations, etc. It is close to SVA, we discuss both in the workflow…
Comment: DESeq2 on NanoString Data by thkapell ▴ 10
Thanks Michael. To this end, do you routinely use RUV or only when you detect a batch? It looks like it works in a similar fashion to SVA w…
Comment: Can NanoString data be analyzed using DESeq2? by thkapell ▴ 10
Thank you. I agree with your thoughts about the similarities of NanoString with RNA-seq. NanoString though, also has positive, negative pro…
Votes
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
Comment: Are voomByGroup and voomLmFit compatible?
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