Showing : enrichplot • reset
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626
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Error in cnetplot
enrichplot clusterProfiler
updated 8 months ago by ★ 4.1k • written 9 months ago by • 0
8
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6
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8.9k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 19 months ago by ▴ 30 • written 6.6 years ago by ▴ 180
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2
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2.8k
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 3 months ago by • 0 • written 20 months ago by • 0
2
votes
2
replies
1.8k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
21 months ago Eva ▴ 10
2
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6
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5.3k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
22 months ago Tobias • 0
0
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1
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973
views
visualizing GSEA showCategory question
enrichplot
updated 23 months ago by 68k • written 23 months ago by • 0
0
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2
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1.5k
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
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0
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726
views
HeatPlot - Genes selections
enrichplot stringr heatplot
2.3 years ago ruba-mahmoud • 0
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3
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3.2k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 2.2 years ago by • 0 • written 2.4 years ago by • 0
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5
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2.3k
views
plot enrichment results
enrichplot clusterProfiler
updated 2.4 years ago by ▴ 760 • written 2.5 years ago by • 0
2
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4
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3.2k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
2.6 years ago Tyroone • 0
0
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1
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2.0k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 2.8 years ago by ★ 4.1k • written 2.8 years ago by • 0
0
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1
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1.1k
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 2.9 years ago by 43k • written 2.9 years ago by • 0
0
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5
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3.9k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 2.3 years ago by • 0 • written 3.0 years ago by • 0
2
votes
3
replies
3.9k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by ▴ 10
0
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1
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2.7k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 3.2 years ago by ★ 1.2k • written 3.2 years ago by • 0
3
votes
5
replies
5.2k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.3 years ago by ★ 1.2k • written 3.5 years ago by ▴ 40
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3
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6.6k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by ▴ 30
1
vote
3
replies
10k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.7 years ago by ★ 3.4k • written 3.7 years ago by • 0
0
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1
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1.7k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.7 years ago by • 0 • written 3.8 years ago by ▴ 10
5
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13
replies
6.7k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.7 years ago by ▴ 50 • written 3.8 years ago by • 0
2
votes
1
reply
2.1k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
4.0 years ago fatimaruizdelabastida ▴ 10
0
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1
reply
2.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.1 years ago by • 0 • written 4.1 years ago by ▴ 10
0
votes
2
replies
2.1k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.2 years ago Adarsh • 0
2
votes
4
replies
4.3k
views
enrichDGN result can't be visualised by barplot
enrichplot
4.2 years ago Pahi ▴ 10
0
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0
replies
1.9k
views
EnrichGO
R enrichplot
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
1
vote
4
replies
7.3k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.7 years ago by • 0 • written 4.4 years ago by • 0
2
votes
6
replies
9.5k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
5.0 years ago • updated 4.9 years ago Emilia ▴ 40
0
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1
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1.9k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.9 years ago by ▴ 40 • written 5.0 years ago by • 0
2
votes
1
reply
1.1k
views
Parsing geoms to enrichplot
enrichplot
5.4 years ago Francois Marchildon ▴ 20
0
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0
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1.4k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.6 years ago jan.soderman • 0
0
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1
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2.9k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 5.9 years ago by ★ 4.1k • written 5.9 years ago by • 0
2
votes
5
replies
3.2k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
written 5.9 years ago by ▴ 30
0
votes
0
replies
1.6k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.8 years ago yurigorelik ▴ 10
0
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0
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2.2k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
7.5 years ago jan.soderman • 0
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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