Showing : enrichplot • reset
0
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837
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Error in cnetplot
enrichplot clusterProfiler
updated 10 months ago by ★ 4.1k • written 10 months ago by • 0
8
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6
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11k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 20 months ago by ▴ 30 • written 6.8 years ago by ▴ 180
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2
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3.2k
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 5 months ago by • 0 • written 22 months ago by • 0
2
votes
2
replies
2.0k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
23 months ago Eva ▴ 10
2
votes
6
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5.9k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
2.0 years ago • updated 23 months ago Tobias • 0
0
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1
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1.0k
views
visualizing GSEA showCategory question
enrichplot
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
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2
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1.6k
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
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0
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758
views
HeatPlot - Genes selections
enrichplot stringr heatplot
2.4 years ago ruba-mahmoud • 0
0
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3
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3.5k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 2.3 years ago by • 0 • written 2.5 years ago by • 0
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5
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2.5k
views
plot enrichment results
enrichplot clusterProfiler
updated 2.6 years ago by ▴ 760 • written 2.6 years ago by • 0
2
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4
replies
3.5k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
2.7 years ago Tyroone • 0
0
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1
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2.1k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 2.9 years ago by ★ 4.1k • written 2.9 years ago by • 0
0
votes
1
reply
1.1k
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
0
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5
replies
4.1k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 2.4 years ago by • 0 • written 3.1 years ago by • 0
2
votes
3
replies
4.1k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.4 years ago by ▴ 150 • written 3.4 years ago by ▴ 10
0
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1
reply
2.9k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 3.3 years ago by ★ 1.2k • written 3.4 years ago by • 0
3
votes
5
replies
5.4k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.4 years ago by ★ 1.2k • written 3.7 years ago by ▴ 40
0
votes
3
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7.1k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by ▴ 10
1
vote
1
reply
1.9k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.7 years ago by ★ 4.1k • written 3.7 years ago by ▴ 30
1
vote
3
replies
12k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.8 years ago by ★ 3.4k • written 3.9 years ago by • 0
0
votes
1
reply
1.7k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.9 years ago by • 0 • written 4.0 years ago by ▴ 10
5
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13
replies
6.9k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.9 years ago by ▴ 50 • written 3.9 years ago by • 0
2
votes
1
reply
2.3k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
4.2 years ago fatimaruizdelabastida ▴ 10
0
votes
1
reply
2.4k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.2 years ago by • 0 • written 4.2 years ago by ▴ 10
0
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2
replies
2.2k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.3 years ago Adarsh • 0
2
votes
4
replies
4.6k
views
enrichDGN result can't be visualised by barplot
enrichplot
4.3 years ago Pahi ▴ 10
0
votes
0
replies
1.9k
views
EnrichGO
R enrichplot
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
1
vote
4
replies
7.7k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.9 years ago by • 0 • written 4.6 years ago by • 0
2
votes
6
replies
9.9k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
5.1 years ago Emilia ▴ 40
0
votes
1
reply
2.0k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 5.1 years ago by ▴ 40 • written 5.2 years ago by • 0
2
votes
1
reply
1.1k
views
Parsing geoms to enrichplot
enrichplot
5.5 years ago Francois Marchildon ▴ 20
0
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0
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1.5k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.8 years ago jan.soderman • 0
0
votes
1
reply
3.0k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 6.0 years ago by ★ 4.1k • written 6.0 years ago by • 0
2
votes
5
replies
3.4k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
written 6.1 years ago by ▴ 30
0
votes
0
replies
1.7k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
7.0 years ago yurigorelik ▴ 10
0
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0
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2.3k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
7.7 years ago jan.soderman • 0
36 results • Page 1 of 1
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Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
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