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ensembl
•
reset
0
votes
0
replies
221
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
10 weeks ago
Ensembl_Jorge
• 0
10
votes
41
replies
7.5k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 7 months ago by
Daniele
• 0 • written 6.1 years ago by
Guido Hooiveld
★ 4.1k
1
vote
0
replies
459
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
11 months ago
Benjamin
▴ 30
3
votes
2
replies
739
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
13 months ago
henrydionne
▴ 10
1
vote
2
replies
990
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
17 months ago
Miguel
• 0
0
votes
2
replies
1.6k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 21 months ago by
Johannes Rainer
★ 2.1k • written 21 months ago by
Christopher
• 0
5
votes
3
replies
2.1k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt
ensembldb
ensembl
2.2 years ago • updated 23 months ago
jamie.gearing
▴ 60
1
vote
2
replies
987
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 2.2 years ago by
Louisse
▴ 10
0
votes
0
replies
789
views
biomaRt, Ensembl, retrieve "Phenotypes" information
Ensembl
biomaRt
2.4 years ago
Hector
• 0
7
votes
5
replies
8.9k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 5 weeks ago by
Ke
• 0 • written 2.7 years ago by
kieran.short
▴ 40
2
votes
0
replies
907
views
News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
2.7 years ago
Benjamin
▴ 30
2
votes
3
replies
2.2k
views
Ensembl non responsive
ensembl
R
2.7 years ago
ksci
▴ 20
2
votes
1
reply
1.3k
views
Can Rsubread output use Ensembl gene IDs
Ensembl
Rsubread
updated 2.8 years ago by
Gordon Smyth
52k • written 2.8 years ago by
agustin.gonvi
▴ 20
9
votes
14
replies
7.8k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 5 months ago by
shepherl
4.1k • written 2.9 years ago by
jon.klonowski
▴ 40
0
votes
3
replies
2.2k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 3.0 years ago by
Mike Smith
★ 6.6k • written 3.0 years ago by
Ariel Simon
• 0
1
vote
0
replies
976
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
3.1 years ago
mchakiachvili
▴ 20
15
votes
13
replies
3.8k
views
celldex ensembl gene annotation issue
SingleR
celldex
HumanPrimaryCellAtlasData
ensembl
updated 3.1 years ago by
xiang
▴ 10 • written 3.2 years ago by
immuno.dh
▴ 20
0
votes
6
replies
2.2k
views
Getting paralogus genes from biomart for mouse
biomart
biomaRt
Ensembl
updated 3.4 years ago by
Kevin Blighe
★ 4.0k • written 3.4 years ago by
hemantcnaik
• 0
0
votes
2
replies
1.6k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.9 years ago • updated 3.7 years ago
mchakiachvili
▴ 20
1
vote
1
reply
1.6k
views
topGO question
Ensembl
ensembldb
updated 4.1 years ago by
James W. MacDonald
67k • written 4.1 years ago by
H. Stotz
• 0
0
votes
0
replies
918
views
News:
Ensembl 102 has been released
Ensembl
biomaRt
BioMar
ensembldb
4.1 years ago
mchakiachvili
▴ 20
5
votes
8
replies
16k
views
Ensembl site unresponsive
ensembl
biomart
updated 3.7 years ago by
tommaso.gastaldi
• 0 • written 4.2 years ago by
lirongrossmann
▴ 50
2
votes
11
replies
7.1k
views
biomaRT connexion problem make failed my unit tests
biomaRt
Peer's Certificate
Ensembl
updated 3.9 years ago by
Mike Smith
★ 6.6k • written 4.3 years ago by
ilysR
• 0
4
votes
17
replies
3.0k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt
annotation
Ensembl
annotationHub
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
Didi
▴ 10
0
votes
1
reply
1.1k
views
News:
Ensembl 101 hase been released
Ensembl
BioMart
News
4.4 years ago
mchakiachvili
▴ 20
1
vote
3
replies
3.0k
views
Convert mouse gene ids to hamster gene ids
biomart
R
ensembl
updated 22 months ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
rykerklie7
• 0
1
vote
0
replies
1.4k
views
News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
News
4.6 years ago
Johannes Rainer
★ 2.1k
1
vote
0
replies
953
views
News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
news
News
4.7 years ago
Thomas Maurel
▴ 800
0
votes
4
replies
1.4k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon
tximport
tximportdata
ensembl
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
slouis
• 0
1
vote
2
replies
1.6k
views
getBM biomart ensembl Error report
biomaRt
ensembl
updated 4.7 years ago by
Mike Smith
★ 6.6k • written 4.7 years ago by
nina.hahn
▴ 10
0
votes
1
reply
1.9k
views
ChIPSeeker with Ensembl IDs
chipseeker
Ensembl
EnsDb.Mmusculus.v79
ensembldb
4.7 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.5k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart
mart
ensembl
updated 4.8 years ago by
James W. MacDonald
67k • written 4.8 years ago by
didemdkn
• 0
0
votes
0
replies
744
views
News:
Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt
Ensembl
News
4.8 years ago
Astrid_Ensembl
• 0
4
votes
4
replies
2.3k
views
biomaRt getSequence fails with genomic coordinates
biomart
getSequence
genomic coordinates
ENSEMBL
bug report
updated 4.9 years ago by
Mike Smith
★ 6.6k • written 4.9 years ago by
Ni-Ar
▴ 10
0
votes
1
reply
856
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
mohsamir2016
• 0
0
votes
0
replies
935
views
News:
Ensembl 99 has been released and renaming of species
biomart
ensembl
e99
mart
news
News
5.0 years ago
Thomas Maurel
▴ 800
4
votes
11
replies
2.6k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 5.0 years ago by
Robert Castelo
★ 3.4k • written 5.0 years ago by
Jeremy Beales
▴ 10
1
vote
3
replies
2.6k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
5.0 years ago
dmgatti
▴ 10
0
votes
14
replies
2.1k
views
Error while opening Mart with biomaRt package
software error
ensembl
biomart
5.1 years ago
loicborcard01
• 0
0
votes
6
replies
1.2k
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl
biomaRt
updated 5.2 years ago by
Mike Smith
★ 6.6k • written 5.2 years ago by
swbarnes2
★ 1.4k
0
votes
7
replies
3.5k
views
BioMart does not find mouse homologs of human genes
biomart
homolog
ortholog
gene conversion
ensembl
updated 5.2 years ago by
James W. MacDonald
67k • written 5.2 years ago by
atakanekiz
▴ 30
0
votes
0
replies
1.1k
views
News:
Ensembl 98 has been released and renaming of species
biomart
ensembl
e98
mart
News
5.3 years ago
Thomas Maurel
▴ 800
0
votes
1
reply
865
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt
Ensembl
updated 5.4 years ago by
Mike Smith
★ 6.6k • written 5.4 years ago by
olibee1315
• 0
0
votes
3
replies
1.7k
views
external_gene_id attribute removed from new biomaRt version
biomaRt
Ensembl
Ensemblplants
5.5 years ago
Didi
▴ 10
1
vote
0
replies
1.1k
views
News:
ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation
ensembldb
Ensembl
News
5.5 years ago
Johannes Rainer
★ 2.1k
1
vote
0
replies
942
views
News:
Ensembl 97 has been released
biomart
ensembl
e97
News
5.5 years ago
James Allen
▴ 10
10
votes
8
replies
3.7k
views
Best alternative annotation package to BiomaRt
R
biomaRt
Ensembl
rnaseq
5.5 years ago
m93
▴ 10
0
votes
1
reply
1.2k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart
ensembl
R
Bioconductor
5.5 years ago
lbuo
• 0
0
votes
4
replies
1.6k
views
Error message: "Request to BioMart web service failed."
BiocManager
biomaRt
listMarts()
ensembl
Biomart
updated 5.5 years ago by
Mike Smith
★ 6.6k • written 5.5 years ago by
ktd2918
• 0
3
votes
2
replies
1.4k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart
geo
software error
ensembl
updated 5.6 years ago by
Mike Smith
★ 6.6k • written 5.6 years ago by
wes
▴ 10
50 results • Page
1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
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R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
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• 0
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