Showing : epigenetics • reset
0
votes
4
replies
369
views
limma with interaction term
R biostatistics limma Epigenetics
12 weeks ago • updated 9 weeks ago Jitendra ▴ 10
0
votes
5
replies
606
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 6 months ago by 65k • written 6 months ago by ▴ 10
3
votes
4
replies
865
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago Jitendra ▴ 10
1
vote
1
reply
363
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 7 months ago by 65k • written 7 months ago by ▴ 10
0
votes
0
replies
483
views
combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
13 months ago Jitendra ▴ 10
0
votes
0
replies
561
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
14 months ago Jitendra ▴ 10
0
votes
3
replies
952
views
batch effect in EPIC array data
statistics Epigenetics R
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
0
votes
0
replies
426
views
rnbeads inference
epigenetics RnBeads
15 months ago Jitendra ▴ 10
0
votes
0
replies
606
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
17 months ago whduke • 0
0
votes
0
replies
844
views
Job: Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation SingleCell Autism Neurogenesis Epigenetics
18 months ago sudhir.thakurela • 0
0
votes
0
replies
801
views
Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
22 months ago xubeisi • 0
0
votes
6
replies
1.3k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
23 months ago Jitendra ▴ 10
0
votes
0
replies
566
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.1 years ago Jitendra ▴ 10
0
votes
0
replies
721
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.2 years ago • updated 2.1 years ago Jitendra ▴ 10
0
votes
2
replies
1.7k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 3.5 years ago by 50k • written 3.5 years ago by ▴ 20
0
votes
0
replies
982
views
Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
826
views
Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.1 years ago rmf ▴ 20
0
votes
0
replies
1.1k
views
Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.1 years ago rmf ▴ 20
0
votes
0
replies
1.2k
views
Job: PhD computational position - Milan
epigenetics transcription computational biology Job
6.8 years ago mattia pelizzola ▴ 200
0
votes
1
reply
1.7k
views
Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.2 years ago by ▴ 60 • written 7.3 years ago by ▴ 120
0
votes
1
reply
1.6k
views
News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90
0
votes
0
replies
1.4k
views
News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
7.6 years ago Yuan Tian ▴ 90
0
votes
0
replies
2.7k
views
Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
8.1 years ago asharm37 • 0
1
vote
0
replies
1.7k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
0
votes
0
replies
1.6k
views
ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
8.5 years ago jdangelo • 0
0
votes
0
replies
1.5k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
10.0 years ago Brian Herb ▴ 80
0
votes
0
replies
1.9k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
10.3 years ago Holger Klein ▴ 20
0
votes
0
replies
1.4k
views
[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
11.2 years ago stefano iacus ▴ 430
0
votes
0
replies
1.4k
views
IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
12.2 years ago Guest User ★ 13k
0
votes
3
replies
1.4k
views
how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 12.4 years ago by 65k • written 12.4 years ago by ▴ 30
0
votes
0
replies
1.4k
views
Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
12.7 years ago Martin Zenke ▴ 10
0
votes
0
replies
1.8k
views
4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.7 years ago mattia pelizzola ▴ 200
0
votes
0
replies
1.4k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
12.7 years ago stefano iacus ▴ 430
0
votes
0
replies
1.3k
views
Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
12.7 years ago Qiong Lin ▴ 10
0
votes
3
replies
2.6k
views
edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 12.9 years ago by ▴ 320 • written 12.9 years ago by ▴ 260
0
votes
0
replies
1.8k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
14.5 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
2
replies
2.3k
views
pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 14.8 years ago by ★ 4.3k • written 14.8 years ago by ★ 1.1k
0
votes
0
replies
1.7k
views
Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
14.8 years ago Joern Toedling ▴ 450
0
votes
0
replies
1.2k
views
Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
15.1 years ago Vincent Detours ▴ 80
0
votes
0
replies
1.1k
views
browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.3 years ago Michael Lawrence ▴ 620
0
votes
0
replies
1.2k
views
sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
15.4 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
0
votes
0
replies
1.3k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
15.8 years ago Martin Morgan 25k
0
votes
0
replies
930
views
[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
0
votes
1
reply
1.2k
views
Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
0
votes
0
replies
1.8k
views
Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
16.0 years ago Julian Lee ▴ 140
0
votes
0
replies
1.6k
views
Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
16.3 years ago Jean Yee Hwa Yang ▴ 130
0
votes
0
replies
1.3k
views
Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
16.5 years ago French, Jef NIH/NIEHS ▴ 30
49 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, just now
The city by the bay, 4 minutes ago
India, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 2 hours ago
Traffic: 500 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6