Showing : goseq • reset
0
votes
1
reply
614
views
News: Gene Set Enrichment Analysis in Bioconductor course
GSEABase GeneSetEnrichment goseq
6 months ago info ▴ 10
5
votes
9
replies
2.5k
views
Inconsistent nullp and goseq enrichment results across operating systems
goseq
written 14 months ago by • 0
2
votes
3
replies
1.2k
views
package goseq seems to be not available on the latest version of R
goseq
updated 16 months ago by 52k • written 16 months ago by ▴ 20
1
vote
2
replies
707
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
18 months ago thomas • 0
1
vote
4
replies
1.1k
views
goseq, warning and strange plot from nullp
goseq
19 months ago boczniak767 ▴ 740
0
votes
1
reply
1.0k
views
Downstream analysis with Differentially Expressed Genes
DESeq2 GO goseq FunctionalAnnotation
updated 2.8 years ago by ▴ 10 • written 2.8 years ago by • 0
0
votes
5
replies
3.4k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 3.3 years ago by 68k • written 3.3 years ago by ▴ 30
0
votes
2
replies
1.3k
views
goseq: Wallenius Vs Fisher's Noncentral Hypergeometric Distribution
goseq
3.4 years ago Steve Pederson ▴ 170
1
vote
2
replies
1.3k
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
3.5 years ago • updated 3.4 years ago m.glymenaki • 0
0
votes
0
replies
1.1k
views
Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 3.5 years ago by 43k • written 3.5 years ago by • 0
1
vote
10
replies
3.6k
views
How to run Goseq for list of ensembl gene IDs
goseq
4.4 years ago Lucky • 0
1
vote
4
replies
2.1k
views
goseq package loading issues
DESeq2 goseq
4.5 years ago avinashi • 0
3
votes
9
replies
2.7k
views
Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 4.5 years ago by 68k • written 4.6 years ago by • 0
2
votes
3
replies
2.6k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 30
2
votes
2
replies
1.6k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 4.7 years ago by 68k • written 4.8 years ago by • 0
0
votes
1
reply
1.3k
views
non-native GO annotation cannot be successfully introduced into Goseq
goseq rnaseq r
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
1
vote
2
replies
1.3k
views
GOSeq analysis in rice
goseq
5.2 years ago • updated 5.1 years ago Jitendra ▴ 10
0
votes
2
replies
1.1k
views
Goseq_analysis related help
goseq
5.2 years ago kumararya563 • 0
0
votes
0
replies
719
views
go seq related help, where I need to do mapping between go term and the protein -id
goseq
5.2 years ago kumararya563 • 0
3
votes
2
replies
1.5k
views
Goseq analysis related help.
annotation goseq
updated 5.2 years ago by ★ 13k • written 5.2 years ago by • 0
0
votes
0
replies
1.3k
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
5.4 years ago hasse.bossenbroek • 0
4
votes
5
replies
2.4k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
5.7 years ago gdalsky ▴ 40
0
votes
1
reply
2.7k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
6.0 years ago Raito92 ▴ 60
2
votes
6
replies
1.6k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by ▴ 60
2
votes
1
reply
2.4k
views
GOseq analysis with only upregulated or downregulated genes
goseq
updated 6.4 years ago by ▴ 320 • written 6.4 years ago by ▴ 180
2
votes
2
replies
1.5k
views
Using GOseq for custom gene set enrichment test
goseq
updated 6.6 years ago by 52k • written 6.6 years ago by • 0
2
votes
2
replies
3.8k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
4
votes
10
replies
3.8k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
9.9 years ago • updated 6.8 years ago Jakub ▴ 50
1
vote
3
replies
2.4k
views
goseq: Formatting category list for use with goseq
goseq category test
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 40
0
votes
0
replies
1.1k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.0 years ago zhu • 0
0
votes
1
reply
1.5k
views
GOseq output but strange warning message!
GOseq GO pwf goseq
7.0 years ago TB18 • 0
1
vote
1
reply
1.7k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 7.1 years ago by 52k • written 7.1 years ago by • 0
3
votes
2
replies
1.4k
views
numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
goseq
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
1
vote
9
replies
2.9k
views
Using goseq with unsupported organism
goseq
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
0
votes
0
replies
1.2k
views
GOseq No Underrepresented Categories
goseq go enrichment
7.2 years ago mart1139 • 0
8
votes
10
replies
2.2k
views
Genes listed in GO categories
goseq biomart
updated 7.2 years ago by 52k • written 7.2 years ago by • 0
0
votes
2
replies
1.2k
views
goseq with hypergeometric method
goseq
updated 7.2 years ago by 52k • written 7.2 years ago by ▴ 40
0
votes
0
replies
1.7k
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
7.4 years ago nancyjwahl7 • 0
2
votes
6
replies
2.6k
views
Can Tximport average transcript length be used for GOSeq?
deseq2 tximport goseq
7.5 years ago casey.rimland ▴ 170
0
votes
6
replies
2.1k
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
7.5 years ago dusan.petrovic • 0
0
votes
2
replies
4.3k
views
DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
0
votes
3
replies
1.7k
views
What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 7.6 years ago by 52k • written 7.6 years ago by • 0
0
votes
1
reply
3.0k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
0
votes
1
reply
2.1k
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 10
1
vote
2
replies
3.5k
views
GOseq: Determining ENSG IDs Associated with Genes Summarized by `numDEInCat` for Each Ontology Term
goseq gene ontology
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
votes
1
reply
1.5k
views
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
goseq rtracklayer
7.9 years ago mgdrnl • 0
2
votes
3
replies
2.2k
views
GOseq error on running nullp
goseq GO term
updated 7.9 years ago by 52k • written 7.9 years ago by • 0
0
votes
1
reply
2.4k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
0
votes
2
replies
2.0k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 8.0 years ago by ★ 29k • written 8.0 years ago by ▴ 10
0
votes
0
replies
1.6k
views
gene length file for GOseq
goseq
8.0 years ago mictadlo ▴ 10
161 results • Page 1 of 4
Recent ...
Replies
Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
Comment: Length of 'dimnames' [1] not equal to array extent by Francesco Silvestro • 0
Resolved the error message!
Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Awards • All
Popular Question to sum31278 • 0
Popular Question to Gordon Smyth 52k
Popular Question to boczniak767 ▴ 740
Popular Question to Young Tae • 0
Popular Question to Robert Castelo ★ 3.4k
Locations • All
United States, 32 minutes ago
United States, 2 hours ago
United States, 2 hours ago
The city by the bay, 3 hours ago
Pittsburgh, United States, 3 hours ago
Traffic: 1081 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6