Showing : methylationarrayanalysis • reset
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
18 days ago • updated 13 days ago hortense96 • 0
1
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1
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294
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 10 weeks ago by 65k • written 10 weeks ago by • 0
1
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4
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471
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
3 months ago • updated 12 weeks ago mikat • 0
2
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4
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633
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Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 4 months ago by 50k • written 4 months ago by • 0
3
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6
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678
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
5 months ago aldea85 • 0
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1
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740
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 7 months ago by 65k • written 7 months ago by • 0
1
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3
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525
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 8 months ago by 65k • written 8 months ago by • 0
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1
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2.5k
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Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 9 months ago by ★ 4.1k • written 9 months ago by ▴ 10
1
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2
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589
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edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
10 months ago Krzysztof • 0
1
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2
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644
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
11 months ago • updated 10 months ago Irene • 0
1
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1
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563
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
2
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6
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1.1k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 12 months ago by ▴ 180 • written 12 months ago by • 0
0
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2
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1.0k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
12 months ago arisarkar88 ▴ 40
0
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1
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543
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 13 months ago by 50k • written 13 months ago by • 0
0
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1
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613
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specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 13 months ago by 65k • written 14 months ago by • 0
5
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1
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1.4k
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Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 3 months ago by • 0 • written 14 months ago by ▴ 70
0
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4
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1.0k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 14 months ago by 65k • written 14 months ago by • 0
0
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5
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1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 14 months ago by • 0
0
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1
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666
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Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 17 months ago by ★ 2.0k
0
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3
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2.8k
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Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 9 months ago by • 0 • written 18 months ago by • 0
0
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7
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2.6k
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ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 18 months ago by 65k • written 24 months ago by • 0
0
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0
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723
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
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0
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932
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getsex function error.
QualityControl methylationArrayAnalysis
2.2 years ago zusman • 0
2
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4
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1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
2.2 years ago Jojo • 0
0
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6
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3.4k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.8 years ago FWNL15 • 0
0
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2
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958
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Limma experiment design and making contrasts
limma methylationArrayAnalysis
3.1 years ago Kesava • 0
1
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8
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1.4k
views
EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
3.1 years ago chay • 0
0
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2
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1.4k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
3.1 years ago arisarkar88 ▴ 40
0
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2
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875
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.3 years ago sissialva21 • 0
2
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7
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2.4k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 6 months ago by • 0 • written 3.4 years ago by ▴ 20
1
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1
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1.1k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
31 results • Page 1 of 1
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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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