Showing : methylationarrayanalysis • reset
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
4 weeks ago • updated 24 days ago hortense96 • 0
1
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1
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338
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 12 weeks ago by 65k • written 12 weeks ago by • 0
1
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4
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503
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
3 months ago mikat • 0
2
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4
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678
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Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 5 months ago by 50k • written 5 months ago by • 0
3
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6
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716
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
6 months ago aldea85 • 0
0
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1
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763
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 7 months ago by 65k • written 7 months ago by • 0
1
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3
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541
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 8 months ago by 65k • written 9 months ago by • 0
0
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1
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2.5k
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Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 9 months ago by ★ 4.1k • written 9 months ago by ▴ 10
1
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2
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608
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edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
10 months ago Krzysztof • 0
1
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2
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672
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
11 months ago Irene • 0
1
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1
reply
575
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
2
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6
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1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 12 months ago by ▴ 180 • written 12 months ago by • 0
0
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2
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1.0k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
13 months ago • updated 12 months ago arisarkar88 ▴ 40
0
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1
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557
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 13 months ago by 50k • written 13 months ago by • 0
0
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1
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628
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specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 14 months ago by 65k • written 14 months ago by • 0
5
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1
reply
1.4k
views
Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 4 months ago by • 0 • written 14 months ago by ▴ 70
0
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4
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1.0k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 14 months ago by 65k • written 14 months ago by • 0
0
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5
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1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 14 months ago by • 0
0
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1
reply
680
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Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 17 months ago by ★ 2.0k
0
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3
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2.8k
views
Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 9 months ago by • 0 • written 18 months ago by • 0
0
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7
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2.7k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 18 months ago by 65k • written 2.0 years ago by • 0
0
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0
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739
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
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0
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952
views
getsex function error.
QualityControl methylationArrayAnalysis
2.3 years ago zusman • 0
2
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4
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1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
2.3 years ago Jojo • 0
0
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6
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3.4k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.8 years ago FWNL15 • 0
0
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2
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969
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Limma experiment design and making contrasts
limma methylationArrayAnalysis
3.1 years ago Kesava • 0
0
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2
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1.4k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
3.1 years ago arisarkar88 ▴ 40
1
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8
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1.4k
views
EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
3.1 years ago chay • 0
0
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2
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883
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.3 years ago sissialva21 • 0
2
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7
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2.5k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 7 months ago by • 0 • written 3.4 years ago by ▴ 20
1
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1
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1.2k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
31 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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