Showing : microrna • reset
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microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
2.1 years ago Lluís Revilla Sancho ▴ 760
1
vote
6
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1.3k
views
low counts from microRNA seq
DESeq2 microRNA HTSeq
2.1 years ago abhay.kanodia • 0
1
vote
4
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1.1k
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
2.3 years ago faiza • 0
1
vote
7
replies
2.5k
views
High padj in DESeq2
deseq2 RNA-seq microRNA
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by ▴ 10
0
votes
1
reply
2.2k
views
Using DeSeq2 on microRNA data
deseq2 mirdeep2 microRNA differential expression analysis
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
0
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1
reply
795
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find genes near a microRNA binding site
R microRNA genes binding Site
5.6 years ago pengu447 • 0
0
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2
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1.6k
views
R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 7.2 years ago by ★ 1.0k • written 7.2 years ago by • 0
0
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4
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1.6k
views
Agilent microrna microaaray
agilent microarrays microrna analysis
7.4 years ago arisarkar88 ▴ 40
0
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0
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952
views
gene set enrichment and pathway analysis of gene expression datas
microarray microrna
8.1 years ago n3da.karami • 0
0
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4
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1.4k
views
Error while normalizing [miRNA-1_0] Affymetrix miRNA Array cel files
microrna microarray cdfinfo
updated 8.4 years ago by 67k • written 8.4 years ago by ▴ 40
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0
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1.2k
views
Combining TLDA cards for normalization
normalization microrna htqpcr
8.5 years ago jamie_jabalee • 0
0
votes
1
reply
3.0k
views
Error in file(file, "rt") : cannot open the connection - Using ExiMir Package
R eximir microrna
8.8 years ago 31sharmajittu1991 • 0
2
votes
2
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1.8k
views
normalized read count per group from edgeR
microrna edger
8.9 years ago manoharankumar01 • 0
2
votes
6
replies
1.9k
views
edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 9.2 years ago by ★ 28k • written 9.2 years ago by • 0
2
votes
1
reply
3.4k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 9.3 years ago by 43k • written 9.3 years ago by ▴ 20
3
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4
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2.9k
views
How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
9.3 years ago mariakarand ▴ 20
0
votes
5
replies
2.6k
views
RUVseq for microRNAs
ruvseq ruv microrna
9.5 years ago sergio.espeso-gil • 0
0
votes
1
reply
1.8k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 9.6 years ago by 67k • written 9.6 years ago by • 0
0
votes
2
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1.4k
views
help with array based microRNA data analysis
limma microRNA limma microRNA
updated 11.0 years ago by ★ 1.3k • written 11.0 years ago by ▴ 190
0
votes
3
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3.6k
views
mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 11.5 years ago by ★ 7.9k • written 11.5 years ago by ▴ 10
0
votes
2
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2.0k
views
Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.8 years ago by 67k • written 11.8 years ago by ▴ 10
0
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0
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1.6k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
11.8 years ago Fiona ▴ 70
0
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4
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1.4k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.9 years ago by 67k • written 11.9 years ago by ▴ 70
0
votes
0
replies
1.9k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.9 years ago Gordon Smyth 52k
0
votes
4
replies
1.3k
views
miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 11.9 years ago by 67k • written 11.9 years ago by ▴ 70
0
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1
reply
1.3k
views
taqman versions
microRNA microRNA
updated 12.3 years ago by ▴ 120 • written 12.3 years ago by ▴ 320
0
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4
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2.0k
views
get al microRNA target sites for a given gene
microRNA microRNA
updated 12.3 years ago by 67k • written 12.3 years ago by ▴ 840
0
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4
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2.0k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 12.5 years ago by ★ 1.3k • written 12.5 years ago by ▴ 30
0
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0
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1.0k
views
Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
12.5 years ago Ali Mohammadian ▴ 290
0
votes
6
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1.6k
views
any good R package to scan microRNA target?
microRNA microRNA
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 2.0k
0
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5
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6.2k
views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 930
0
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4
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1.5k
views
A problem about trimLRPatterns
microRNA microRNA
updated 12.9 years ago by ▴ 590 • written 12.9 years ago by ★ 2.0k
0
votes
0
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938
views
Trouble in using AgiMicroRna Package
Microarray microRNA Microarray microRNA
13.0 years ago Kannan Venugopal ▴ 10
0
votes
5
replies
1.7k
views
Limma question
limma microRNA limma microRNA
updated 13.1 years ago by ▴ 740 • written 13.1 years ago by ▴ 30
0
votes
0
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916
views
how to analyze
affy microRNA affy microRNA
13.2 years ago Adrian Johnson ▴ 330
0
votes
6
replies
2.7k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
13.2 years ago Peter Davidsen ▴ 210
6
votes
11
replies
3.0k
views
edgeR on microRNA data
microRNA edgeR miRNA
13.3 years ago • updated 3.7 years ago Gordon Smyth 52k
0
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2
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1.7k
views
ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.4k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 13.4 years ago by ★ 2.0k • written 13.5 years ago by ★ 4.1k
0
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0
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930
views
align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
13.5 years ago Hervé Pagès 16k
0
votes
0
replies
946
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
13.5 years ago Viki S ▴ 20
0
votes
1
reply
1.1k
views
cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 13.5 years ago by 67k • written 13.5 years ago by ▴ 10
0
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0
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1.3k
views
align microRNA with custom mRNA sequences
microRNA microRNA
13.5 years ago Jason Shoemaker ▴ 80
0
votes
0
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1.1k
views
dCHip
microRNA microRNA
13.6 years ago Ayse Ulgen ▴ 30
0
votes
0
replies
1.5k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.7 years ago chawla ▴ 190
0
votes
8
replies
1.9k
views
microRNA hg build?
microRNA microRNA
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ★ 1.1k
0
votes
0
replies
1.4k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
13.8 years ago David ▴ 860
0
votes
8
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2.3k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.8 years ago by ▴ 930 • written 13.8 years ago by ▴ 860
0
votes
1
reply
1.3k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 13.9 years ago by ★ 8.2k • written 13.9 years ago by ▴ 120
0
votes
1
reply
1.4k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 14.0 years ago by ▴ 200 • written 14.0 years ago by ▴ 120
50 results • Page 1 of 1
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Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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