Showing : org.Hs.eg.db • reset
2
votes
4
replies
433
views
Use of data packages in containers
org.Hs.eg.db
updated 4 months ago by ▴ 730 • written 4 months ago by ▴ 20
0
votes
1
reply
537
views
Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
2
replies
1.0k
views
Download package ' org.Hs.eg.db 'when a problem emerged
org.Hs.eg.db
updated 14 months ago by • 0 • written 14 months ago by • 0
2
votes
3
replies
1.3k
views
org.Hs.eg.db gives more than one ENTREZID for a gene symbol
org.Hs.eg.db AnnotationDbi
updated 15 months ago by 65k • written 15 months ago by • 0
0
votes
1
reply
595
views
REFSEQ identifiers XP_047XXXXXX do not have ENTREZID within org.Hs.eg.db
org.Hs.eg.db
updated 20 months ago by 50k • written 20 months ago by • 0
0
votes
3
replies
1.2k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
21 months ago • updated 20 months ago sandmann.t ▴ 70
1
vote
1
reply
1.2k
views
org.Hs.eg.db，Error: could not find function ".libPath"
org.Hs.eg.db
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by • 0
5
votes
13
replies
4.2k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
4
votes
6
replies
2.3k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub OrganismDbi org.Hs.eg.db
updated 2.2 years ago by 50k • written 2.2 years ago by • 0
1
vote
3
replies
2.8k
views
Error in installing org.Hs.eg.db
org.Hs.eg.db org.H
2.4 years ago 2041792073 • 0
0
votes
1
reply
1.2k
views
problem in installing "org.Hs.eg.db" package
org.Hs.eg.db
updated 2.4 years ago by 3.9k • written 2.4 years ago by • 0
1
vote
2
replies
1.2k
views
The RSQLite package fails to be installed
RSQLite org.Hs.eg.db
2.7 years ago chenghaomai • 0
1
vote
2
replies
1.2k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
0
votes
3
replies
1.1k
views
Issue "one-to-many" with org.Hs.eg.db
org.Hs.eg.db
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
0
votes
1
reply
901
views
can NOT library ‘org.Hs.eg.db’
org.Hs.eg.db
updated 3.0 years ago by ★ 6.5k • written 3.0 years ago by ▴ 30
1
vote
2
replies
1.5k
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
3.0 years ago Rodrigo • 0
6
votes
15
replies
5.9k
views
Couldn't load org.Hs.eg.db
org.Hs.eg.db
updated 3.0 years ago by • 0 • written 3.1 years ago by ▴ 30
44
votes
29
replies
11k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 3.0 years ago by ▴ 130 • written 3.1 years ago by ▴ 160
3
votes
3
replies
2.4k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
3.1 years ago sgupt46 • 0
3
votes
2
replies
1.3k
views
Error when using org.Hs.eg.db package
org.Hs.eg.db
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
votes
4
replies
3.7k
views
Problem with install installation("org.Hs.eg.db") package
org.Mm.eg.db org.Hs.eg.db
3.2 years ago • updated 3.1 years ago Eslam • 0
0
votes
1
reply
1.6k
views
problem of install packages "org.Hs.eg.db"
org.Hs.eg.db
updated 3.2 years ago by 25k • written 3.2 years ago by • 0
0
votes
0
replies
712
views
Regarding Genome versions
org.Hs.eg.db BSgenome.Hsapiens.UCSC.hg38
3.3 years ago Konstantinos Yeles ▴ 80
4
votes
2
replies
1.4k
views
ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
AnnotationDbi EnsDb.Hsapiens org.Hs.eg.db
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by • 0
5
votes
7
replies
2.6k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 3.3 years ago by 50k • written 3.3 years ago by • 0
2
votes
2
replies
2.6k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by • 0
2
votes
2
replies
2.3k
views
Error while installing "org.Hs.eg.db"
org.Hs.eg.db
3.4 years ago sevencds ▴ 10
4
votes
4
replies
1.9k
views
Annotation with org.Hs.eg.db Genome Build 38
AnnotationDbi org.Hs.eg.db
3.4 years ago Bine ▴ 40
2
votes
2
replies
846
views
Annotation: Use of org.Hs.egCHR to map Gene Entrez to Chromosome
org.Hs.egCHR org.Hs.eg.db
3.4 years ago Bine ▴ 40
4
votes
3
replies
2.3k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
3.4 years ago Emilia ▴ 30
11
votes
13
replies
4.0k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
3.4 years ago • updated 3.3 years ago rohitsatyam102 ▴ 20
0
votes
2
replies
1.4k
views
Error in installing org.Hs.eg.db
software error org.Hs.eg.db win10
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
0
votes
1
reply
893
views
After "DBI" and "AnnotationDbi" are installed, the AnnotationDbi dependency package is still not available when "org.hs.eg.db" is installed
org.hs.eg.db AnnotationDbi
updated 4.1 years ago by 25k • written 4.1 years ago by • 0
1
vote
1
reply
927
views
Error with installation of org.Hs.eg.db
software error org.Hs.eg.db
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
1
vote
6
replies
2.0k
views
why org.Hs.egGO2ALLEGS contain genes number difference from GO database?
org.Hs.eg.db org.Hs.egGO2ALLEGS
updated 22 months ago by • 0 • written 4.7 years ago by • 0
0
votes
1
reply
1.1k
views
org.Hs.eg.db can not be downloaded
org.Hs.eg.db
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
2
votes
5
replies
973
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 65k • written 4.9 years ago by • 0
4
votes
5
replies
1.5k
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 5.1 years ago by 65k • written 5.1 years ago by ▴ 10
3
votes
3
replies
5.1k
views
failing to install the package org.Hs.eg.db in R (version 3.5.2 )
org.Hs.eg.db AnnotationDbi
updated 14 months ago by • 0 • written 5.2 years ago by • 0
0
votes
1
reply
1.5k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
5.4 years ago natske ▴ 10
2
votes
1
reply
1.7k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
4
votes
3
replies
1.8k
views
Gene-GO-term relationship discrepancy between org.Hs.eg.db and geneontology.org
org.hs.eg.db
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
votes
1
reply
1.6k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
1
vote
1
reply
936
views
genes in rhesus genome (ref. TxDb.Mmulatta.UCSC.rheMac8.refGene)
org.hs.eg.db org.mmu.eg.db
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 120
0
votes
0
replies
1.3k
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
6.1 years ago nancyjwahl7 • 0
1
vote
3
replies
12k
views
Converting gene symbol list to Entrez IDs
org.hs.eg.db entrez gene identifiers genesymbols
updated 6.2 years ago by ▴ 70 • written 6.2 years ago by ▴ 10
0
votes
5
replies
1.8k
views
enrichGO returning NA
clusterprofiler org.hs.eg.db
updated 6.4 years ago by ★ 1.2k • written 6.4 years ago by • 0
1
vote
12
replies
2.8k
views
Error: C stack usage when installing Txdb package
txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db
updated 6.4 years ago by ★ 3.7k • written 6.4 years ago by ★ 1.1k
3
votes
3
replies
3.6k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger DGEList org.hs.eg.db gene annotation
updated 2.6 years ago by • 0 • written 6.4 years ago by ▴ 830
0
votes
3
replies
2.4k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db loadNamespace .onLoad dbFileConnect(dbfile)
updated 6.5 years ago by 65k • written 6.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea() by James W. MacDonald 65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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