Showing : rnbeads • reset
0
votes
3
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3.0k
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RnBeads cannot locate libjasper.so.1
rnbeads gs ghostscript shared libraries cluster
8.8 years ago bmreilly • 0
4
votes
4
replies
2.9k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 8.1 years ago by 65k • written 8.2 years ago by ▴ 60
2
votes
4
replies
2.4k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
8.8 years ago bmreilly • 0
0
votes
2
replies
2.3k
views
error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 8.2 years ago by • 0 • written 8.7 years ago by • 0
0
votes
0
replies
2.2k
views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads software error
8.4 years ago areyoujokingme • 0
1
vote
9
replies
2.2k
views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
updated 8.5 years ago by • 0 • written 8.5 years ago by • 0
0
votes
2
replies
2.2k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads noob preprocessFunnorm BMIQ
updated 7.1 years ago by ★ 6.5k • written 7.1 years ago by ▴ 10
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
8.4 years ago areyoujokingme • 0
0
votes
2
replies
1.9k
views
RnBeads set ghost script environment variable
RnBeads ghostscript
4.5 years ago Kathrin.Klee • 0
0
votes
2
replies
1.9k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
8.5 years ago Brian Smith ▴ 120
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.2 years ago • updated 2.1 years ago Jitendra ▴ 10
2
votes
9
replies
1.9k
views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
updated 2.5 years ago by • 0 • written 3.4 years ago by • 0
0
votes
1
reply
1.7k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
8.7 years ago schasse • 0
0
votes
2
replies
1.7k
views
rnBeads error for the report path
software error rnbeads
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by • 0
1
vote
1
reply
1.7k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 8.5 years ago by ▴ 10 • written 8.5 years ago by ▴ 120
1
vote
2
replies
1.6k
views
How to install Ghostscript in windows?
RnBeads.hg19 RnBeads
written 3.2 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
7.7 years ago rasii • 0
0
votes
1
reply
1.5k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 120
1
vote
1
reply
1.4k
views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
6.5 years ago preethibagopi28 ▴ 10
0
votes
1
reply
1.4k
views
RnBeads data preprocessing error
RnBeads
updated 6.1 years ago by • 0 • written 6.5 years ago by • 0
0
votes
0
replies
1.3k
views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
7.4 years ago Habil Zare ▴ 200
0
votes
2
replies
1.3k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
8.2 years ago areyoujokingme • 0
2
votes
4
replies
1.3k
views
How to launch the RnBeads Data Juggler?
RnBeads
3.2 years ago Federica ▴ 10
1
vote
3
replies
1.2k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 4.9 years ago by ▴ 50 • written 4.9 years ago by ★ 1.1k
0
votes
1
reply
1.2k
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 40
0
votes
3
replies
1.1k
views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads rn6 RnBeadsAnnotationCreator
updated 5.2 years ago by ▴ 50 • written 5.3 years ago by • 0
2
votes
3
replies
1.1k
views
RnBeads::combine() - error?
RnBeads Rnbeads2.0 RnBeads2
updated 3.1 years ago by ▴ 50 • written 3.9 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
6.6 years ago Theo ▴ 10
0
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1
reply
1.1k
views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
6.0 years ago neuro3030 • 0
0
votes
0
replies
1.0k
views
differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
6.2 years ago gabrielrfries • 0
0
votes
0
replies
1.0k
views
'type = genes' for RnBeads::meth() function
rnbeads
7.3 years ago Tom ▴ 10
0
votes
0
replies
1.0k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.2 years ago D ▴ 10
0
votes
0
replies
1.0k
views
RnBeads, enrichment analysis
rnbeads
7.5 years ago gaiusjaugustus • 0
0
votes
3
replies
936
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 11 months ago by ▴ 780 • written 11 months ago by ▴ 10
1
vote
1
reply
854
views
How to export methylation tracks in bed format
RnBeads
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
0
votes
0
replies
820
views
How to know the number of detected CpG islands with RnBeads
RnBeads
3.2 years ago Federica ▴ 10
0
votes
0
replies
793
views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
4.1 years ago caoy4g4 • 0
0
votes
0
replies
723
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
votes
0
replies
568
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.1 years ago Jitendra ▴ 10
0
votes
0
replies
427
views
rnbeads inference
epigenetics RnBeads
15 months ago Jitendra ▴ 10
40 results • Page 1 of 1
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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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