Showing : xcms • reset
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37
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How to convert .raw data for use in xcms
xcms
3 days ago Monica • 0
0
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1
reply
436
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XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 12 months ago by 68k • written 12 months ago by • 0
1
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3
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1.4k
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 14 months ago by 68k • written 15 months ago by • 0
0
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1
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906
views
News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 15 months ago by • 0 • written 15 months ago by ▴ 10
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2
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4.1k
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Error: BiocParallel errors
xcms msdata BiocParallel
2.4 years ago mavamay • 0
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0
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1.0k
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mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
2.6 years ago Abrianna • 0
0
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1
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1.1k
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by • 0
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0
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780
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XCMS normalization
xcms
2.9 years ago T.RU • 0
0
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1
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1.1k
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msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 3.0 years ago by • 0 • written 3.2 years ago by ▴ 10
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0
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749
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dont find xcmsSet for peak analysis
xcms
3.3 years ago aline.lafise • 0
1
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4
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2.2k
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xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 3.5 years ago by • 0 • written 5.2 years ago by ▴ 30
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0
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1.1k
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
3.7 years ago mba • 0
5
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5
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1.7k
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Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 3.8 years ago by ★ 2.1k • written 3.8 years ago by ▴ 20
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3
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2.1k
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Warning messages during intallation of XCMS
xcms Install
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
0
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0
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1.1k
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BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
4.2 years ago noerman • 0
0
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4
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20k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 3.4 years ago by 68k • written 4.4 years ago by • 0
0
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2
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2.0k
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colMax is not exported from the xcms package
xcms
4.7 years ago Habil Zare ▴ 200
0
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0
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1.1k
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Mass spec intensity difference
xcms
4.7 years ago Phytochem • 0
0
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0
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1.1k
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Running > 100 samples per group - memory issues
xcms memory findchrompeaks
4.8 years ago abrsoule ▴ 30
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0
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2.0k
views
BiocParallel errors with xcms
BiocParallel xcms
4.8 years ago Yuki ▴ 10
1
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3
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1.6k
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 5.2 years ago by ★ 2.1k • written 5.2 years ago by ▴ 10
0
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1
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2.4k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 5.2 years ago by 1.6k • written 5.2 years ago by • 0
0
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3
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1.7k
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Use xcms but mzR occurs error
software error xcms
updated 5.4 years ago by ★ 4.0k • written 5.4 years ago by • 0
0
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4
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2.3k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 5.4 years ago by 1.6k • written 5.4 years ago by • 0
3
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2
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1.5k
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 5.6 years ago by ★ 2.1k • written 5.6 years ago by ▴ 30
1
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2
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1.9k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 5.6 years ago by ▴ 20 • written 5.6 years ago by ▴ 30
0
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3
replies
2.7k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 5.7 years ago by ★ 2.1k • written 5.7 years ago by • 0
2
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13
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3.3k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
6.3 years ago abrsoule ▴ 30
0
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5
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2.0k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 6.4 years ago by 1.6k • written 6.4 years ago by • 0
2
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6
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2.4k
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xcms centwave roiList error
roiList xcms centwave XIC
updated 6.5 years ago by ★ 2.1k • written 6.5 years ago by ▴ 10
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1
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1.8k
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XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
6.5 years ago garfield320 ▴ 30
2
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1
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1.8k
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mzR unable to open uncorrupted mzXML file
software error mzR xcms
6.8 years ago abrsoule ▴ 30
0
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4
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3.6k
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Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
6.8 years ago lmg • 0
0
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0
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1.4k
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Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
6.9 years ago Johannes Rainer ★ 2.1k
0
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0
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1.8k
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Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 7.0 years ago by • 0 • written 7.2 years ago by ★ 2.1k
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4
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2.2k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
7.4 years ago cpataki • 0
0
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9
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5.1k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
7.4 years ago goh • 0
3
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1
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1.4k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 7.4 years ago by 1.6k • written 7.4 years ago by • 0
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1
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2.1k
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XCMS for GC-MS
xcms GC-MS
7.5 years ago Joe • 0
0
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4
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2.9k
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Chromatographic peak detection failed for all files
xcms
7.6 years ago yuchiu • 0
0
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1
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2.2k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 7.7 years ago by ★ 2.1k • written 7.7 years ago by • 0
2
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4
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1.9k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
7.9 years ago • updated 7.8 years ago james.dalgleish ▴ 30
1
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2
replies
3.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 8.2 years ago by ★ 2.1k • written 8.2 years ago by ▴ 30
1
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5
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4.0k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
8.2 years ago bhgyu ▴ 30
5
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7
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3.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 8.2 years ago by ★ 2.1k • written 8.2 years ago by ▴ 30
2
votes
1
reply
2.6k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 8.5 years ago by • 0 • written 9.9 years ago by ▴ 20
0
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2
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1.7k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 8.5 years ago by 1.6k • written 8.5 years ago by • 0
0
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0
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1.4k
views
xcmsFragments extract product fragment
xcms xcms2
8.6 years ago riccardo.romoli • 0
1
vote
4
replies
2.5k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 14 months ago by • 0 • written 8.8 years ago by • 0
1
vote
1
reply
1.7k
views
xcms warning message
R xcms warning message
updated 9.1 years ago by ★ 2.1k • written 9.1 years ago by • 0
79 results • Page 1 of 2
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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