Showing : xcms • reset
0
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2
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1.2k
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Error: BiocParallel errors
xcms msdata BiocParallel
7 months ago mavamay • 0
0
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0
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400
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
10 months ago Abrianna • 0
0
votes
1
reply
449
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 12 months ago by ★ 4.0k • written 12 months ago by • 0
0
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0
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365
views
XCMS normalization
xcms
14 months ago T.RU • 0
0
votes
1
reply
595
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 14 months ago by • 0 • written 18 months ago by ▴ 10
0
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0
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428
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dont find xcmsSet for peak analysis
xcms
18 months ago aline.lafise • 0
1
vote
4
replies
1.4k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 21 months ago by • 0 • written 3.4 years ago by ▴ 30
0
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0
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656
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
24 months ago mba • 0
5
votes
5
replies
1.0k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 20
0
votes
3
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1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
0
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0
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632
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
2.4 years ago noerman • 0
0
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4
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14k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 20 months ago by 65k • written 2.7 years ago by • 0
0
votes
2
replies
1.3k
views
colMax is not exported from the xcms package
xcms
2.9 years ago Habil Zare ▴ 200
0
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0
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663
views
Mass spec intensity difference
xcms
3.0 years ago Phytochem • 0
0
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0
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667
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
3.0 years ago abrsoule ▴ 30
0
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0
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1.4k
views
BiocParallel errors with xcms
BiocParallel xcms
3.1 years ago Yuki ▴ 10
1
vote
3
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972
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 3.4 years ago by ★ 2.0k • written 3.4 years ago by ▴ 10
0
votes
1
reply
1.3k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 3.5 years ago by 1.6k • written 3.5 years ago by • 0
0
votes
3
replies
1.1k
views
Use xcms but mzR occurs error
software error xcms
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
votes
4
replies
1.4k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
3
votes
2
replies
816
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.8 years ago by ★ 2.0k • written 3.8 years ago by ▴ 30
1
vote
2
replies
1.1k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 3.9 years ago by ▴ 20 • written 3.9 years ago by ▴ 30
0
votes
3
replies
1.4k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.0 years ago by ★ 2.0k • written 4.0 years ago by • 0
2
votes
13
replies
1.9k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
4.6 years ago abrsoule ▴ 30
0
votes
5
replies
1.2k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.6 years ago by 1.6k • written 4.6 years ago by • 0
2
votes
6
replies
1.6k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 4.7 years ago by ★ 2.0k • written 4.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
4.7 years ago garfield320 ▴ 30
2
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1
reply
1.1k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.1 years ago abrsoule ▴ 30
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.1 years ago lmg • 0
0
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0
replies
1.0k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
5.2 years ago Johannes Rainer ★ 2.0k
0
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0
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1.3k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 5.3 years ago by • 0 • written 5.4 years ago by ★ 2.0k
0
votes
4
replies
1.3k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
5.6 years ago cpataki • 0
0
votes
9
replies
2.9k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
5.7 years ago goh • 0
3
votes
1
reply
941
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 5.7 years ago by 1.6k • written 5.7 years ago by • 0
0
votes
1
reply
1.5k
views
XCMS for GC-MS
xcms GC-MS
5.7 years ago Joe • 0
0
votes
4
replies
1.8k
views
Chromatographic peak detection failed for all files
xcms
5.8 years ago yuchiu • 0
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.0 years ago by ★ 2.0k • written 6.0 years ago by • 0
2
votes
4
replies
1.2k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.1 years ago james.dalgleish ▴ 30
1
vote
2
replies
2.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 6.4 years ago by ★ 2.0k • written 6.4 years ago by ▴ 30
1
vote
5
replies
3.0k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
6.5 years ago bhgyu ▴ 30
5
votes
7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
2
votes
1
reply
2.1k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 6.8 years ago by • 0 • written 8.2 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 6.8 years ago by 1.6k • written 6.8 years ago by • 0
0
votes
0
replies
983
views
xcmsFragments extract product fragment
xcms xcms2
6.8 years ago riccardo.romoli • 0
0
votes
1
reply
1.5k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 7.1 years ago by 50k • written 7.1 years ago by • 0
1
vote
1
reply
1.2k
views
xcms warning message
R xcms warning message
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
7.4 years ago buescher • 0
1
vote
7
replies
2.2k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.1k
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by • 0
0
votes
1
reply
1.4k
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 7.5 years ago by 65k • written 7.5 years ago by • 0
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
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Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
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Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
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You are just making up data? What is the point of this exercise?
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What do you mean by 'the information'? Do you have things in particular that you want?
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Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
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