Showing : xcms • reset
0
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2
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1.2k
views
Error: BiocParallel errors
xcms msdata BiocParallel
7 months ago mavamay • 0
0
votes
0
replies
405
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
10 months ago Abrianna • 0
0
votes
1
reply
456
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 12 months ago by ★ 4.0k • written 12 months ago by • 0
0
votes
0
replies
368
views
XCMS normalization
xcms
14 months ago T.RU • 0
0
votes
1
reply
600
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 15 months ago by • 0 • written 18 months ago by ▴ 10
0
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0
replies
431
views
dont find xcmsSet for peak analysis
xcms
18 months ago aline.lafise • 0
1
vote
4
replies
1.4k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 21 months ago by • 0 • written 3.5 years ago by ▴ 30
0
votes
0
replies
662
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
24 months ago mba • 0
5
votes
5
replies
1.0k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 20
0
votes
3
replies
1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
0
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0
replies
638
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
2.4 years ago noerman • 0
0
votes
4
replies
14k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 20 months ago by 65k • written 2.7 years ago by • 0
0
votes
2
replies
1.3k
views
colMax is not exported from the xcms package
xcms
2.9 years ago Habil Zare ▴ 200
0
votes
0
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669
views
Mass spec intensity difference
xcms
3.0 years ago Phytochem • 0
0
votes
0
replies
674
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
3.0 years ago abrsoule ▴ 30
0
votes
0
replies
1.4k
views
BiocParallel errors with xcms
BiocParallel xcms
3.1 years ago Yuki ▴ 10
1
vote
3
replies
975
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 3.5 years ago by ★ 2.0k • written 3.5 years ago by ▴ 10
0
votes
1
reply
1.3k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 3.5 years ago by 1.6k • written 3.5 years ago by • 0
0
votes
3
replies
1.1k
views
Use xcms but mzR occurs error
software error xcms
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
votes
4
replies
1.4k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
3
votes
2
replies
823
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.8 years ago by ★ 2.0k • written 3.8 years ago by ▴ 30
1
vote
2
replies
1.1k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 3.9 years ago by ▴ 20 • written 3.9 years ago by ▴ 30
0
votes
3
replies
1.4k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.0 years ago by ★ 2.0k • written 4.0 years ago by • 0
2
votes
13
replies
2.0k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
4.6 years ago abrsoule ▴ 30
0
votes
5
replies
1.3k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.6 years ago by 1.6k • written 4.6 years ago by • 0
2
votes
6
replies
1.6k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 4.7 years ago by ★ 2.0k • written 4.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
4.8 years ago garfield320 ▴ 30
2
votes
1
reply
1.2k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.1 years ago abrsoule ▴ 30
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.1 years ago lmg • 0
0
votes
0
replies
1.0k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
5.2 years ago Johannes Rainer ★ 2.0k
0
votes
0
replies
1.3k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 5.3 years ago by • 0 • written 5.4 years ago by ★ 2.0k
0
votes
4
replies
1.3k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
5.6 years ago cpataki • 0
0
votes
9
replies
2.9k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
5.7 years ago goh • 0
3
votes
1
reply
948
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 5.7 years ago by 1.6k • written 5.7 years ago by • 0
0
votes
1
reply
1.5k
views
XCMS for GC-MS
xcms GC-MS
5.7 years ago Joe • 0
0
votes
4
replies
1.8k
views
Chromatographic peak detection failed for all files
xcms
5.8 years ago yuchiu • 0
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.0 years ago by ★ 2.0k • written 6.0 years ago by • 0
2
votes
4
replies
1.3k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.1 years ago james.dalgleish ▴ 30
1
vote
2
replies
2.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 6.4 years ago by ★ 2.0k • written 6.4 years ago by ▴ 30
1
vote
5
replies
3.1k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
6.5 years ago bhgyu ▴ 30
5
votes
7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
2
votes
1
reply
2.1k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 6.8 years ago by • 0 • written 8.2 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 6.8 years ago by 1.6k • written 6.8 years ago by • 0
0
votes
0
replies
987
views
xcmsFragments extract product fragment
xcms xcms2
6.8 years ago riccardo.romoli • 0
0
votes
1
reply
1.5k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 7.1 years ago by 50k • written 7.1 years ago by • 0
1
vote
1
reply
1.2k
views
xcms warning message
R xcms warning message
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
7.4 years ago buescher • 0
1
vote
7
replies
2.2k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.1k
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by • 0
0
votes
1
reply
1.4k
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 7.5 years ago by 65k • written 7.5 years ago by • 0
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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