2
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4
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279
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Error EPICv2 ChAMP
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updated 25 days ago by 65k • written 29 days ago by • 0
4
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6
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465
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FilterByExpr low counts with small sample size
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4 weeks ago • updated 25 days ago Jonathan ▴ 10
0
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1
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136
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FDR via q-value
qvalue
updated 25 days ago by 65k • written 28 days ago by • 0
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
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Cannabis and KEGGgraph
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updated 25 days ago by ★ 4.0k • written 28 days ago by ▴ 10
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2
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RNAseq:Technical replicates from different batches
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28 days ago • updated 25 days ago catv • 0
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0
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94
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Unlocking Potential: NURS FPX Strategies and Insights
levi NURSFPX ragene20sttranscriptcluster.db ssrch
26 days ago vaxahey107 • 0
3
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3
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368
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permutation test in edgeR
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updated 26 days ago by 50k • written 5 weeks ago by • 0
0
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18
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2.6k
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problem installing ENmix package
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105
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I am trying to detect alternative splicing.
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27 days ago Sebashish • 0
3
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Job: Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
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817
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
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0
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4
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263
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Differential peaks that were not identified in diffbind were identified in diseq2
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4 weeks ago • updated 27 days ago lonn • 0
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28 days ago BioinfGuru ▴ 30
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7
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DESeq filtering specific to contrasts
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updated 28 days ago by 42k • written 3 months ago by • 0
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281
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Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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3
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biomaRt
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2
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5
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2
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2
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211
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OrgDb for maize
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updated 28 days ago by 65k • written 29 days ago by • 0
6
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10
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Which input file is used for DGEList in EgdeR?
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updated 28 days ago by • 0 • written 15 months ago by ▴ 10
0
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4
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DEG with low counts
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updated 28 days ago by 42k • written 4 weeks ago by • 0
6
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Finding DEGs by using edgeR
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updated 28 days ago by 50k • written 29 days ago by • 0
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28 days ago prity6459 • 0
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updated 29 days ago by • 0 • written 9.2 years ago by ▴ 150
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4
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216
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fgsea
29 days ago sropri • 0
1
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2
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variancePartition
29 days ago Le • 0
0
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3
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A ComBat-seq issue: the covariates are confounded
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updated 29 days ago by ▴ 850 • written 5 weeks ago by • 0
0
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0
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updated 29 days ago by 3.9k • written 29 days ago by • 0
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Adding columns to DEXSeqResults object
DEXSeq
updated 29 days ago by ★ 1.9k • written 4 weeks ago by • 0
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rlog transformation
DESeq2
updated 29 days ago by 42k • written 29 days ago by • 0
0
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124
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ONT long-read RNA sequencing - data analysis options
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updated 29 days ago by 42k • written 29 days ago by • 0
0
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1
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149
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covariate with negative and positive values
DESeq2
updated 29 days ago by 42k • written 4 weeks ago by • 0
1
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2
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Error in champ.load(): The following specified files do not exist
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4 weeks ago • updated 29 days ago Sherin • 0
9
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12
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Multi factor design edgeR/Deseq2
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updated 29 days ago by • 0 • written 8.9 years ago by ▴ 30
5
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9
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973
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Light difference when using coef vs omit a group when compare 3 groups.
limma
5 weeks ago • updated 29 days ago Chris ▴ 10
0
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1
reply
110
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Input Question for deseq.r
RSeqAn
updated 29 days ago by ★ 4.1k • written 4 weeks ago by • 0
0
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1
reply
165
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DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 29 days ago by ★ 4.1k • written 4 weeks ago by • 0
3
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3
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244
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Reading huge bismark coverage files using bbseq::read.bismark
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5 weeks ago • updated 29 days ago jacques.imbert • 0
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9
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Batch correction and repeated measures
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updated 29 days ago by 50k • written 7 months ago by ▴ 10
192 results • Page 4 of 4
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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