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1.2k
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News: European Bioconductor Conference 2023 planning
Europe Conference EuroBioC Events News
updated 25 days ago by • 0 • written 19 months ago by ▴ 70
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Unlocking Potential: NURS FPX Strategies and Insights
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26 days ago vaxahey107 • 0
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permutation test in edgeR
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updated 26 days ago by 50k • written 5 weeks ago by • 0
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18
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problem installing ENmix package
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I am trying to detect alternative splicing.
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26 days ago Sebashish • 0
3
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Job: Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
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0
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4
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261
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Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
29 days ago • updated 26 days ago lonn • 0
1
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2
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261
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How to retrieve detailed regression results from deseq2
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5 weeks ago • updated 27 days ago Weiqian ▴ 10
1
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
27 days ago BioinfGuru ▴ 30
0
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7
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444
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DESeq filtering specific to contrasts
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updated 27 days ago by 42k • written 3 months ago by • 0
0
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2
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278
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Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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6 weeks ago • updated 27 days ago isaac.vock • 0
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Error retrieving ensembl gene id using biomaRt...
biomaRt
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2
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209
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OrgDb for maize
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updated 27 days ago by 65k • written 28 days ago by • 0
6
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10
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Which input file is used for DGEList in EgdeR?
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updated 27 days ago by • 0 • written 15 months ago by ▴ 10
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4
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Estimating Cell Counts for EPIC V2 array data
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Finding DEGs by using edgeR
subsettingdata edgeR designmatrix
updated 27 days ago by 50k • written 28 days ago by • 0
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How to make DGEList and design matrix by edgeR package
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27 days ago prity6459 • 0
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Theoretical WGCNA Question
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updated 28 days ago by • 0 • written 9.1 years ago by ▴ 150
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FGSEA pre-ranked input in increasing order or decreasing
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28 days ago sropri • 0
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significant difference of p-values with dream() after updating VariancePartition
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28 days ago Le • 0
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3
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Adding columns to DEXSeqResults object
DEXSeq
updated 28 days ago by ★ 1.9k • written 4 weeks ago by • 0
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rlog transformation
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updated 28 days ago by 42k • written 28 days ago by • 0
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ONT long-read RNA sequencing - data analysis options
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149
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covariate with negative and positive values
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updated 28 days ago by 42k • written 4 weeks ago by • 0
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Error in champ.load(): The following specified files do not exist
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29 days ago • updated 28 days ago Sherin • 0
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5 weeks ago • updated 28 days ago Chris ▴ 10
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DESEQ2 output gives multiple groups when only 2 groups are present
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News: List of Deprecated Packages for Bioc3.18
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Single-Cell Data Simulation from Bulk RNA-seq
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updated 29 days ago by • 0 • written 18 months ago by • 0
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updated 29 days ago by • 0 • written 11 months ago by • 0
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News: Services
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193 results • Page 4 of 4
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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