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3
votes
4
replies
1.5k
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DESEQ2 Results log2fold and pvalue changes after removing genes
DESeq2
4.1 years ago
Bine
▴ 50
1
vote
3
replies
1.2k
views
Question about DESeq2 statistical analysis
microRNAincats
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
sofia.hanas
• 0
0
votes
0
replies
1.1k
views
Job:
Bioconductor developer
FlowCytometry
flowCore
4.1 years ago
markkelly1983
▴ 20
1
vote
4
replies
1.8k
views
seqinfo got changed after `library(rtracklayer)`
rtracklayer
GenomeInfoDb
4.1 years ago
Ge Tan
▴ 20
0
votes
1
reply
945
views
different results between DESeq model with multiple groups or with specific groups
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
giulia.lopatriello
• 0
0
votes
1
reply
1.2k
views
diffbind binding affinity matrix
diffbind
DiffBind
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
akankshabafna
• 0
0
votes
2
replies
3.2k
views
DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExper…
DiffBind
ChIPSeqData
updated 3.5 years ago by
millerh1
▴ 10 • written 4.1 years ago by
sfpacman
• 0
3
votes
4
replies
4.1k
views
dba.contrast in DiffBind
v3.4.0
DiffBind
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
AMA
• 0
0
votes
1
reply
3.0k
views
problem in installing "org.Hs.eg.db" package
org.Hs.eg.db
updated 4.1 years ago by
shepherl
4.2k • written 4.1 years ago by
Shuiqing
• 0
0
votes
1
reply
1.1k
views
Problem with ArrayQualityMetrics PCA plot
arrayQualityMetrics
updated 4.1 years ago by
Wolfgang Huber
★ 13k • written 4.1 years ago by
michael.s
• 0
1
vote
2
replies
1.4k
views
CRISPRseek package: offTargetAnalysis() error with mouse genome
CRISPRseek
4.1 years ago
nderian
▴ 10
0
votes
1
reply
1.2k
views
Isolate contrasts in DESeq2 while using a combination of categorical and continuous variables
Contrast
design
DESeq2
continuous
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
tiansy
• 0
0
votes
2
replies
4.1k
views
REAL() can only be applied to a 'numeric', not a 'integer'
#WGCNA
#tom
#integer
#REAL
#numeric
4.1 years ago • updated 3.9 years ago
devbhavin20
• 0
0
votes
1
reply
1.8k
views
Calculating dn/ds ratios
biomaRt
updated 4.1 years ago by
Mike Smith
★ 6.6k • written 4.1 years ago by
morgantom1221
• 0
0
votes
3
replies
3.1k
views
Error in DESeq2
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
mithu18mohan
• 0
0
votes
0
replies
1.2k
views
findOverlapsOfPeaks - peaklist of connectedPeaks="min:
findOverlapsOfPeaks
ChIPpeakAnno
chipseq
4.1 years ago
Nadav
• 0
0
votes
0
replies
2.3k
views
How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
4.1 years ago
synat.keam
• 0
0
votes
1
reply
1.4k
views
cellHTS2 - normalization with BScore (performance
cellHTS2
Normalization
updated 4.1 years ago by
Wolfgang Huber
★ 13k • written 4.1 years ago by
liebi83
• 0
1
vote
3
replies
1.8k
views
Error with hclust
RNASeqR
#hclust
#wgcna
#dissimilarity
#average
updated 4.1 years ago by
ATpoint
★ 5.0k • written 4.1 years ago by
devbhavin20
• 0
0
votes
0
replies
1.2k
views
DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
4.1 years ago
opheevallee
• 0
0
votes
2
replies
1.2k
views
deseq2 datasetfrommatrix
DESeq2
updated 4.1 years ago by
ATpoint
★ 5.0k • written 4.1 years ago by
Chay
• 0
1
vote
1
reply
1.2k
views
Deseq2 contrasts and design for paired analysis
TimeSeriesExperiment
RNASeq
design
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
Kesava
• 0
2
votes
3
replies
4.4k
views
Suppress messages from ALL calls to load package
suppressPackageStartupMessages
Biobase
updated 4.1 years ago by
ATpoint
★ 5.0k • written 4.1 years ago by
Elizabeth Purdom
▴ 210
0
votes
2
replies
1.2k
views
Why does biomart have multiple positions for the same gene
biomaRt
4.1 years ago
adeler001
• 0
0
votes
9
replies
2.5k
views
DEseq2 replicate normalization
DEseq2
replicate
DESeq2
normalization
4.1 years ago
michael.morash
• 0
0
votes
1
reply
1.3k
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar
DEGseq
MicroarrayData
updated 4.1 years ago by
James W. MacDonald
68k • written 4.1 years ago by
biomyscience
• 0
2
votes
4
replies
8.8k
views
Installing packages by bioconductor version 3.14
Bioconductor
4.1 years ago
Evan
▴ 20
2
votes
1
reply
2.2k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler
enrichplot
heatplot
4.1 years ago
fatimaruizdelabastida
▴ 10
1
vote
2
replies
1.8k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld()
snpStats
4.1 years ago
Anastasiia
• 0
7
votes
8
replies
5.3k
views
Installing Bioconductor
Bioconductor
4.1 years ago
array chip
▴ 420
3
votes
23
replies
5.9k
views
GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
GEOquery
VROOM
4.1 years ago
array chip
▴ 420
3
votes
5
replies
5.8k
views
Can I use VST on TPM data? (DESeq2)
DESeq2
VST
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
BT
▴ 10
1
vote
5
replies
1.7k
views
Need help for ProStaR Stand-alone install
Prostar
updated 3.6 years ago by
Wang
• 0 • written 4.1 years ago by
benoit.marchand
• 0
1
vote
1
reply
1.2k
views
plyranges select() when a metadata column is shared with core variable
plyranges
4.1 years ago • updated 3.9 years ago
Michael Love
43k
0
votes
1
reply
2.0k
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 4.1 years ago by
ATpoint
★ 5.0k • written 4.1 years ago by
Johan Largo
• 0
2
votes
2
replies
1.2k
views
padjust after running DESEQ2
DESeq2
4.1 years ago
Bine
▴ 50
1
vote
2
replies
5.3k
views
cnetplot with enrichKEGG results
clusterProfiler
enrichKEGG
cnetplot
4.1 years ago
fatimaruizdelabastida
▴ 10
3
votes
2
replies
1.9k
views
How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
TCGA
GenomicDataCommons
updated 4.1 years ago by
Robert Castelo
★ 3.4k • written 4.1 years ago by
Hashirama
▴ 10
1
vote
8
replies
2.5k
views
PureCN: Copy Number of 7 issue
Pure
PureCN
updated 4.1 years ago by
markus.riester
▴ 130 • written 4.1 years ago by
jacobgross04
• 0
0
votes
0
replies
1.3k
views
Problem loading Red channel idat files with champ.load
R
MethylationArrayData
ChAMP
4.1 years ago
Paulina
• 0
0
votes
0
replies
1.0k
views
scRNA technical replicates in separate runs
SingleCellExperiment
scRNAseq
4.1 years ago
Núria
• 0
0
votes
15
replies
5.5k
views
Tximeta Error: lexical error: invalid char in json text.
tximeta
4.1 years ago
atariw
▴ 10
0
votes
0
replies
1.4k
views
Job:
Postdoctoral Position in Bioinformatics to study Gene Regulatory Networks (University of Basel, Basel, Switzerland)
PostDoc
JobPosting
Basel
Switzerland
4.1 years ago
Robert Ivanek
▴ 750
0
votes
3
replies
1.9k
views
tximport question on what counts to use for LogFC calculations
tximport
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
mailmpunta
• 0
2
votes
9
replies
3.5k
views
STRINGdb images very low quality?
STRINGdb
updated 4.0 years ago by
damian.szk
▴ 110 • written 4.1 years ago by
jarod
▴ 30
0
votes
0
replies
963
views
QDNAseq Error calculateBlacklist
QDNAseq
blacklist
CopyNumberVariation
blocklist
4.1 years ago
briverog
• 0
3
votes
2
replies
1.7k
views
Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 4.1 years ago by
Hervé Pagès
16k • written 4.1 years ago by
Charles Plessy
▴ 180
1
vote
2
replies
3.8k
views
GEO RNASeq data query
GEOquery
RNASeq
GEO
updated 4.1 years ago by
Sean Davis
21k • written 4.1 years ago by
20yx17
▴ 10
0
votes
1
reply
1.5k
views
Trouble with gene dendrogram
Network
RNASeq
WGCNA
updated 3.0 years ago by
shuo
• 0 • written 4.1 years ago by
jms2520
▴ 10
0
votes
4
replies
5.3k
views
Normalization by variance stabilizing transformation VST
library
composition
vst
DESeq2
Normalization
4.1 years ago
kristoffersandas
• 0
46,704 results • Page
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